Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq10539 86.0 5e-13 >seq10539 Length=3576580 Score = 86.0 bits (94), Expect = 5e-13 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 |||| | ||||| |||||||| || || | || | | ||| || ||||| |||| Sbjct 647948 TAGGCGCTTTGAGATGGACCGAGAGCCACACGAAGCTCGTTTCTGCGCAGAGTGCAATAA 647889 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 | ||| ||||||||| || ||| | ||||| ||||| |||||| | ||||| || Sbjct 647888 ACGGCACAGTGCTGAGGAGGGAGACCTGTGGGCGGAGTCCAGCATGCTCGGCCTGCGGAT 647829 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCAC 5181 ||||||||| || | ||||| || || || | ||| ||||| Sbjct 647828 CACCTACTTCGCCTTCATGGACGGCAAAGTCTTTGACATCAC 647787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40113554950980