Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq10539 86.0 5e-13
>seq10539
Length=3576580
Score = 86.0 bits (94), Expect = 5e-13
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079
|||| | ||||| |||||||| || || | || | | ||| || ||||| ||||
Sbjct 647948 TAGGCGCTTTGAGATGGACCGAGAGCCACACGAAGCTCGTTTCTGCGCAGAGTGCAATAA 647889
Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139
| ||| ||||||||| || ||| | ||||| ||||| |||||| | ||||| ||
Sbjct 647888 ACGGCACAGTGCTGAGGAGGGAGACCTGTGGGCGGAGTCCAGCATGCTCGGCCTGCGGAT 647829
Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCAC 5181
||||||||| || | ||||| || || || | ||| |||||
Sbjct 647828 CACCTACTTCGCCTTCATGGACGGCAAAGTCTTTGACATCAC 647787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40113554950980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |