Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq12 100 2e-17 >seq12 Length=4863787 Score = 100 bits (110), Expect = 2e-17 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||| ||||||| |||||||| ||||| ||| | | ||||||||| ||||| | Sbjct 3125109 AGGCGGTTTGAGATGGACCGAGAACCCGCTGAAGCCCGCTTCTGTGCTGAATGTAACCGT 3125168 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||| |||||||| || ||| | ||||| |||||||||||||||||| | ||| Sbjct 3125169 TGCCATAGCGCTGAGGAGGGAGACCTGTGGGCCGAGTCGAGCATGTTGGGCTTACGCATC 3125228 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || ||||| || ||||| ||||| || |||||||| |||| Sbjct 3125229 ACGTACTTCGCTTGTATGGAAGGAAAAGTATATGATATAACAG 3125271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40104957076380