Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq13390 98.7 8e-17 >seq13390 Length=2852176 Score = 98.7 bits (108), Expect = 8e-17 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACC-TAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||| | ||||| |||||||| || || | || || | | ||||| |||||||| | Sbjct 2045434 AGGCGTTTTGAGATGGACCGTGAGCCGTCCGAA-GCGCGGTTTTGTGCCGAGTGTAACCG 2045492 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||| |||||||| || ||||| ||||| |||||||||||| |||||||| || Sbjct 2045493 TTGCCATAGCGCTGAGGAGGGGGACTTGTGGGCGGAGTCAAGCATGCTGGGCCTCCGCAT 2045552 Query 5125 CACCTACTTTGCGCTG-ATGGATGGAAAGGTGTATGATATCACAG 5168 ||| |||||||| ||| ||||| || ||||| || || ||||||| Sbjct 2045553 CACGTACTTTGC-CTGTATGGACGGCAAGGTCTACGACATCACAG 2045596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40203681510880