Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq6558 120 2e-23 >seq6558 Length=5428992 Score = 120 bits (132), Expect = 2e-23 Identities = 126/163 (77%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 5020 TAGGAGGTTTGAAATGGACCGGGA-ACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATA 5078 |||| | ||||| ||||||||||| || ||| ||| | | ||||||||| ||||| Sbjct 2022956 TAGGCGCTTTGAGATGGACCGGGAGCCCGGTGAG-GCCCGCTTCTGTGCTGAATGTAACC 2023014 Query 5079 GGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAA 5138 | | ||| ||||||||| || ||| | ||||| ||||| |||||| ||||||| | Sbjct 2023015 GCCGCCATGGTGCTGAGGAGGGAGACCTGTGGGCGGAGTCCAGCATGCTGGGCCTGCGCA 2023074 Query 5139 TCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCAC 5181 ||||||||||||| |||||||||||||| ||||| ||||| Sbjct 2023075 TCACCTACTTTGCCTACATGGATGGAAAGGTCTATGACATCAC 2023117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40115279039220