Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq6453 100 2e-18 seq908 100 2e-18 >seq6453 Length=133116 Score = 100 bits (110), Expect = 2e-18 Identities = 79/91 (87%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| Sbjct 120179 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGCGCGCTCTTGCTCCACCTCC 120120 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||| || || || || |||||||||| Sbjct 120119 CCGACAGAGT--GGGCG-AG-ACGGGCCGGT 120093 >seq908 Length=47660 Score = 100 bits (110), Expect = 2e-18 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| Sbjct 37188 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGCGCGCTCTTGCTCCACCTCC 37247 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||| | |||| || || |||||||||| Sbjct 37248 CCGAC-AGAGCGGG-CG-AG-ACGGGCCGGT 37274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860595993670