Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cottus_20rhenanus_20[genbank_20GCA_5F001455555.1_202015-12-02] 164,693 sequences; 563,609,416 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq64917 116 3e-22 >seq64917 Length=8429 Score = 116 bits (128), Expect = 3e-22 Identities = 136/177 (77%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTA-AGAGTGCCAGATACTGTGCTGAGTGTAATA 5078 |||| |||| || ||||| || || ||| |||| ||| | | |||||| ||||| || Sbjct 5514 TAGGCGGTTCGAGATGGATCGTGAGCCTGCAGAG-GCCCGCTTCTGTGCCGAGTGCAACC 5456 Query 5079 GGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAA 5138 | ||| ||||||||| || ||| | ||||| ||||| |||||||||||||| | Sbjct 5455 GTTGCCATAGTGCTGAGGAGGGGGACCTGTGGGCCGAGTCCAGCATGTTGGGCCTGCGTA 5396 Query 5139 TCACCTACTTTGCGCTG-ATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGA 5194 |||| |||||||| ||| |||||||| ||||||| |||||| |||| ||| ||| || Sbjct 5395 TCACATACTTTGC-CTGTATGGATGGCAAGGTGTTTGATATTACAG-GTGAGCTTGA 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40044068778924