Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq5644 80.6 2e-11 >seq5644 Length=209089 Score = 80.6 bits (88), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG- 5064 ||| | ||||| ||||| ||||| ||| ||| | | ||||||||| || || | Sbjct 198954 AGGCGCTTTGAGATGGATCGGGATCCTGCTGAAGCCCGCTTCTGTGCTGAATGCAACCGT 199013 Query 5065 -GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAA 5123 || || | |||||||| || ||| | ||||| ||||| |||||||||||| | | Sbjct 199014 TGCCACAGC--GCTGAGGAGGGCGACCTGTGGGCCGAGTCCAGCATGTTGGGCTTACGCA 199071 Query 5124 TCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||| ||||| || ||||| ||||| |||| ||||| |||| Sbjct 199072 TCACATACTTCGCTTGCATGGAAGGAAAAGTGTTCGATATAACAG 199116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40167538477984