Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq154 82.4 4e-13 seq2201 75.2 6e-11 >seq154 Length=1352349 Score = 82.4 bits (90), Expect = 4e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 839 GCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCC 898 |||||||||||||||||| |||||||||||||| |||| ||||| | |||||||||||| Sbjct 12763 GCCCAGGCATAGTTCACCGTCTTTCGGGTCCTATCGCACACGCTCATTCTCCACCTCCCC 12822 Query 899 GAC 901 || Sbjct 12823 AAC 12825 >seq2201 Length=42710 Score = 75.2 bits (82), Expect = 6e-11 Identities = 58/67 (87%), Gaps = 4/67 (6%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCC--TAACGCATGCGCTCGTGCTCCACCT 894 ||||||||||||||||||||||||||||||||| |||| ||| |||| |||| |||| Sbjct 10861 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATAACACAT--GCTCATGCTTCACCC 10918 Query 895 CCCCGAC 901 |||| || Sbjct 10919 CCCCAAC 10925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860526840982