Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq534 93.3 2e-16 seq7 91.5 8e-16 seq5 91.5 8e-16 seq4 87.8 1e-14 >seq534 Length=14336 Score = 93.3 bits (102), Expect = 2e-16 Identities = 79/94 (84%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| Sbjct 5833 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCCGTCGCGCGCGCTCTGGCTCCACCTCC 5892 Query 897 CCGAC---GCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||| |||| |||| | ||| ||||||||| Sbjct 5893 CCGACGGAGCGGGCGGGGC-TAG-GCGGGCCGGT 5924 >seq7 Length=74282399 Score = 91.5 bits (100), Expect = 8e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| | | |||| |||||| ||||||||||| Sbjct 6937 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCGCACGCGCTCTAGCTCCACCTCC 6878 Query 897 CCGAC 901 ||||| Sbjct 6877 CCGAC 6873 >seq5 Length=72500376 Score = 91.5 bits (100), Expect = 8e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| | | |||| |||||| ||||||||||| Sbjct 823002 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCGCACGCGCTCTAGCTCCACCTCC 823061 Query 897 CCGAC 901 ||||| Sbjct 823062 CCGAC 823066 Score = 91.5 bits (100), Expect = 8e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| | | |||| |||||| ||||||||||| Sbjct 834649 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCGCACGCGCTCTAGCTCCACCTCC 834708 Query 897 CCGAC 901 ||||| Sbjct 834709 CCGAC 834713 >seq4 Length=78093715 Score = 87.8 bits (96), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| | | ||| ||||| |||||||||||| Sbjct 55726028 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCGCGCACGCTCTTGCTCCACCTCC 55726087 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| |||| || || || |||||||||| Sbjct 55726088 CCG--GCGGAGCGGGCG-AG-ACGGGCCGGT 55726114 Score = 87.8 bits (96), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| | | ||| ||||| |||||||||||| Sbjct 55781211 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCGCGCACGCTCTTGCTCCACCTCC 55781152 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| |||| || || || |||||||||| Sbjct 55781151 CCG--GCGGAGCGGGCG-AG-ACGGGCCGGT 55781125 Score = 87.8 bits (96), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| | | ||| ||||| |||||||||||| Sbjct 55797407 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCGCGCACGCTCTTGCTCCACCTCC 55797348 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| |||| || || || |||||||||| Sbjct 55797347 CCG--GCGGAGCGGGCG-AG-ACGGGCCGGT 55797321 Score = 87.8 bits (96), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| | | ||| ||||| |||||||||||| Sbjct 55812967 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCGCGCACGCTCTTGCTCCACCTCC 55812908 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| |||| || || || |||||||||| Sbjct 55812907 CCG--GCGGAGCGGGCG-AG-ACGGGCCGGT 55812881 Score = 87.8 bits (96), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||| | | ||| ||||| |||||||||||| Sbjct 68565703 CTGCCCAGGCATAGTTCACCATCTTTCGGGTACCATCGCGCACGCTCTTGCTCCACCTCC 68565762 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| |||| || || || |||||||||| Sbjct 68565763 CCG--GCGGAGCGGGCG-AG-ACGGGCCGGT 68565789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860743267654