Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_028259.1 Length=11183 Score E Sequences producing significant alignments: (Bits) Value seq1736 78.8 7e-11 seq25 78.8 7e-11 >seq1736 Length=536750 Score = 78.8 bits (86), Expect = 7e-11 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 2346 GAAAGGTTCAAAAGTGCTATGGCGCCAATAACGCATTCTTAACCACATTGGATGACTACA 2405 |||| | || || |||||||| |||| ||||||||| | |||| ||||||||||||| Sbjct 348305 GAAAAATCCAGAAATGCTATGGTGCCACCAACGCATTCCTGCCCACTTTGGATGACTACA 348364 Query 2406 TTGCCTCTGCATTCAGCAATGCACAC 2431 || | || || || |||||||||||| Sbjct 348365 TTTCATCAGCCTTTAGCAATGCACAC 348390 >seq25 Length=37502051 Score = 78.8 bits (86), Expect = 7e-11 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 2346 GAAAGGTTCAAAAGTGCTATGGCGCCAATAACGCATTCTTAACCACATTGGATGACTACA 2405 |||| | || || |||||||| |||| ||||||||| | |||| ||||||||||||| Sbjct 22519078 GAAAAATCCAGAAATGCTATGGTGCCACCAACGCATTCCTGCCCACTTTGGATGACTACA 22519137 Query 2406 TTGCCTCTGCATTCAGCAATGCACAC 2431 || | || || || |||||||||||| Sbjct 22519138 TTTCATCAGCCTTTAGCAATGCACAC 22519163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35669628315484