Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq336 91.5 8e-16 seq10164 80.6 2e-12 >seq336 Length=502814 Score = 91.5 bits (100), Expect = 8e-16 Identities = 77/91 (85%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||| ||||||||||||||||| | || ||||| ||||||||||| Sbjct 500621 CTGCCCAGGCATAGTTCCCCATCTTTCGGGTCCTATCACACACGCTCAAGCTCCACCTCC 500562 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||| |||| || || || |||||||||| Sbjct 500561 CCGA--CGGTGTGGGCG-AG-ACGGGCCGGT 500535 >seq10164 Length=846354 Score = 80.6 bits (88), Expect = 2e-12 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||| |||||||||||| | || ||||| ||||||||||| Sbjct 763701 CTGCCCAGGCATAGTTCACCATATTTCGGGTCCTATCACACACGCTCAAGCTCCACCTCC 763760 Query 897 CC 898 || Sbjct 763761 CC 763762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860499669640