Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq7677 118 9e-23 >seq7677 Length=155990 Score = 118 bits (130), Expect = 9e-23 Identities = 126/164 (77%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTA-AGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||| |||| || ||||| || |||||| |||| ||| | | |||||||||||| || | Sbjct 30454 AGGCGGTTCGAGATGGATCGTGAACCTGCAGAG-GCCCGGTTCTGTGCTGAGTGCAACCG 30396 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||| ||||||||| || ||| | ||||| ||||| |||||||||||||| || Sbjct 30395 TTGCCATAGTGCTGAGGAGGGGGACCTGTGGGCCGAGTCCAGCATGTTGGGCCTGCGCAT 30336 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||| |||||||| |||||||| ||||||||||| || |||| Sbjct 30335 CACATACTTTGCATGTATGGATGGCAAGGTGTATGACATTACAG 30292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40203529060168