Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq15403 109 3e-21 seq15037 109 3e-21 seq14982 109 3e-21 seq14950 109 3e-21 seq14890 109 3e-21 seq14867 109 3e-21 seq11623 109 3e-21 seq11622 109 3e-21 seq10112 96.9 2e-17 >seq15403 Length=9273 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 5227 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGTGCGCTCACGCTCCACCTCC 5286 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||| | |||| || || |||||||||| Sbjct 5287 CCGACGCTG-CGGG-CG-AG-ACGGGCCGGT 5313 >seq15037 Length=12961 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 10309 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGTGCGCTCACGCTCCACCTCC 10250 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||| | |||| || || |||||||||| Sbjct 10249 CCGACGCTG-CGGG-CG-AG-ACGGGCCGGT 10223 >seq14982 Length=13690 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 9825 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGTGCGCTCACGCTCCACCTCC 9766 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||| | |||| || || |||||||||| Sbjct 9765 CCGACGCTG-CGGG-CG-AG-ACGGGCCGGT 9739 >seq14950 Length=6505 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 685 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGTGCGCTCACGCTCCACCTCC 744 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||| | |||| || || |||||||||| Sbjct 745 CCGACGCTG-CGGG-CG-AG-ACGGGCCGGT 771 >seq14890 Length=13128 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 5385 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGTGCGCTCACGCTCCACCTCC 5444 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||| | |||| || || |||||||||| Sbjct 5445 CCGACGCTG-CGGG-CG-AG-ACGGGCCGGT 5471 >seq14867 Length=12646 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 4135 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGTGCGCTCACGCTCCACCTCC 4194 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||| | |||| || || |||||||||| Sbjct 4195 CCGACGCTG-CGGG-CG-AG-ACGGGCCGGT 4221 >seq11623 Length=4631 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 4054 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGTGCGCTCACGCTCCACCTCC 4113 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||| | |||| || || |||||||||| Sbjct 4114 CCGACGCTG-CGGG-CG-AG-ACGGGCCGGT 4140 >seq11622 Length=15083 Score = 109 bits (120), Expect = 3e-21 Identities = 82/91 (90%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| Sbjct 400 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGTGCGCTCACGCTCCACCTCC 459 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||| | |||| || || |||||||||| Sbjct 460 CCGACGCTG-CGGG-CG-AG-ACGGGCCGGT 486 >seq10112 Length=18371 Score = 96.9 bits (106), Expect = 2e-17 Identities = 63/68 (93%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTC-CTAACGCATGCGCTCGTGCTCCACCTC 895 |||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||| Sbjct 6600 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCTCTATCGCGTGCGCTCACGCTCCACCTC 6659 Query 896 CCCGACGC 903 |||||||| Sbjct 6660 CCCGACGC 6667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860299734586