Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq940 95.1 1e-15 >seq940 Length=7378152 Score = 95.1 bits (104), Expect = 1e-15 Identities = 123/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAA-GAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||| | ||||| ||||| || ||||| ||| ||| | | ||||||||| || | | | Sbjct 6853370 AGGCGCTTTGAGATGGATCGTGAACCCGCCGAG-GCCCGCTTCTGTGCTGAATGCAGTCG 6853428 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 | |||| || || || || ||| | ||||| ||||| |||||||||||||| || Sbjct 6853429 TCGGCATAGCGCCGAAGAGGGCGACCTGTGGGCCGAGTCCAGCATGTTGGGCCTACGTAT 6853488 Query 5125 CACCTACTTTGCGCTG-ATGGATGGAAAGGTGTATGATATCACAG 5168 ||| |||||||| ||| ||||| || || || |||||||| |||| Sbjct 6853489 CACATACTTTGC-CTGTATGGACGGCAAAGTCTATGATATTACAG 6853532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40194291542248