Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hippocampus_20comes_20[refseq_20GCF_5F001891065.1_202016-12-08] 37,377 sequences; 493,775,940 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq822 105 4e-20 seq968 96.9 2e-17 seq809 82.4 4e-13 >seq822 Length=457018 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| Sbjct 49374 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGCGCGCTCTGGCTCCACCTCC 49433 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||||| |||| || || ||||||||| Sbjct 49434 CCGACGCGG-CGGG-CG-AG-GCGGGCCGGT 49460 >seq968 Length=220680 Score = 96.9 bits (106), Expect = 2e-17 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||| Sbjct 164385 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGCGTGCTCAGGCTCCACCTCC 164444 Query 897 CCGACGCGGTCGG 909 ||||||||| || Sbjct 164445 TCGACGCGGTGGG 164457 >seq809 Length=886213 Score = 82.4 bits (90), Expect = 4e-13 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||| ||||||||||||||||||||||||||||| ||| ||||| ||||||||||| Sbjct 173536 CTGCCAAGGCATAGTTCACCATCTTTCGGGTCCTATCGCGCACGCTCAGGCTCCACCTCC 173595 Query 897 CCGACGCGGTCGGGT 911 | | || || ||||| Sbjct 173596 CTGGCGAGG-CGGGT 173609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2859697303746