Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictalurus_20punctatus_20[refseq_20GCF_5F001660625.1_202016-06-21] 9,341 sequences; 783,274,721 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq21 129 5e-26 >seq21 Length=20987006 Score = 129 bits (142), Expect = 5e-26 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||| ||||||| |||||||| || ||| | || ||| ||||||||||||||||| Sbjct 9852264 AGGCGGTTTGAGATGGACCGCGAGCCTCACGAAGCGCGATTCTGTGCTGAGTGTAATAAA 9852323 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 | |||| ||||||||||| ||| | ||||| ||||| |||||| | || || || ||| Sbjct 9852324 CGGCATGGCGCTGAGGAAGGAGACCTGTGGGCTGAGTCCAGCATGCTCGGTCTGAAGATC 9852383 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCAC 5181 |||||||| || | ||||| ||||| || ||||| ||||| Sbjct 9852384 ACCTACTTCGCCTTCATGGACGGAAAAGTCTATGACATCAC 9852424 Score = 78.8 bits (86), Expect = 7e-11 Identities = 64/78 (82%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 5179 CACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTG 5238 |||||||||||| || |||||||| | ||||||||||| ||||| || | ||||| | Sbjct 9852600 CACAGAGTGGGCGGGTTGCCAGCGAATAGGAATCTCCCCTGATACACATCGTGTCCCCTA 9852659 Query 5239 TCACATCTCATTTGGTTC 5256 ||||||||| ||||| || Sbjct 9852660 TCACATCTCTTTTGGCTC 9852677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40114184107788