Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq2170 113 4e-21 >seq2170 Length=375600 Score = 113 bits (124), Expect = 4e-21 Identities = 127/165 (77%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAA-GAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||| |||| || ||||| || ||||| | ||| ||| | | ||||||||| || || | Sbjct 124214 AGGCGGTTCGAGATGGATCGTGAACCCACTGAG-GCCCGGTTCTGTGCTGAATGCAACCG 124156 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||| ||||||||| || ||| | ||||| ||||| |||||||||||||| || Sbjct 124155 TTGCCATAGTGCTGAGGAGGGGGACCTGTGGGCTGAGTCCAGCATGTTGGGCCTGCGCAT 124096 Query 5140 CACCTACTTTGCGCTG-ATGGATGGAAAGGTGTATGATATCACAG 5183 ||| |||||||| ||| |||||||| ||||| |||||||| |||| Sbjct 124095 CACATACTTTGC-CTGTATGGATGGCAAGGTCTATGATATTACAG 124052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40116681327744