Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq4 100 2e-17 >seq4 Length=73198282 Score = 100 bits (110), Expect = 2e-17 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||| ||||||| ||||| ||||| || ||| | | ||| || ||||| | | | Sbjct 12161843 AGGCGGTTTGAGATGGAGCGGGATCCCGGTGAAGCCCGGTTCTGCGCAGAGTGCAGCAAG 12161784 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||| |||||||| || ||||| ||||| ||||| |||||| |||| || ||| Sbjct 12161783 AGGCACAGCGCTGAGGAGGGCGACTTCTGGGCTGAGTCCAGCATGCTGGGGCTGCGCATC 12161724 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 12161723 ACCTACTTCGCCCTGATGGACGGGAAGGTCTATGACATCACAG 12161681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117530734568