Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq14 89.7 3e-15 seq7 86.0 4e-14 seq17 77.0 2e-11 >seq14 Length=32369425 Score = 89.7 bits (98), Expect = 3e-15 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||| |||| | |||||||||||||||| Sbjct 31836420 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTATCGCACACACTCGTGCTCCACCTCC 31836479 Query 897 CCGA 900 | || Sbjct 31836480 CTGA 31836483 >seq7 Length=50812227 Score = 86.0 bits (94), Expect = 4e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 836 ACTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTC 895 ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| Sbjct 21599154 ACTGCCCAGGCATAGTTCACCATCTCCCGGGTCCTGTCGCATGCACTCGTGCTCCACCTT 21599095 Query 896 CCCGA 900 || || Sbjct 21599094 CCTGA 21599090 >seq17 Length=32595267 Score = 77.0 bits (84), Expect = 2e-11 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACC 893 ||||||||||||||||||||||||||||||||||| |||| | | |||||||||| Sbjct 6158808 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCACATGTTTGTGCTCCACC 6158864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860743179148