Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 3e-16 >seq10 Length=57197669 Score = 96.9 bits (106), Expect = 3e-16 Identities = 127/172 (74%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||| | || || ||||| || |||||| || | | ||||||||| || || | Sbjct 44625901 AGGCGTTTCGAGATGGATCGTGAACCTGCTGAAGCTCGCTTCTGTGCTGAATGCAACTG- 44625843 Query 5081 CTGC-ATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 |||| || || ||||| || ||| | ||||| |||||||||||||||||| | ||| Sbjct 44625842 CTGCCATAGCGCAGAGGAGGGAGACCTGTGGGCCGAGTCGAGCATGTTGGGCTTACGAAT 44625783 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCT 5191 ||| ||||| || ||||| ||||||||||||||||| |||| ||| ||| Sbjct 44625782 CACGTACTTCGCTTGTATGGAAGGAAAGGTGTATGATATTACAG-GTGAGCT 44625732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40115738495196