Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 3e-15 >seq10 Length=57197669 Score = 93.3 bits (102), Expect = 3e-15 Identities = 126/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||| | || || ||||| || |||||| || | | ||||||||| || || | Sbjct 44625901 AGGCGTTTCGAGATGGATCGTGAACCTGCTGAAGCTCGCTTCTGTGCTGAATGCAACTG- 44625843 Query 5066 CTGC-ATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 |||| || || ||||| || ||| | ||||| ||||| |||||||||||| | ||| Sbjct 44625842 CTGCCATAGCGCAGAGGAGGGAGACCTGTGGGCCGAGTCGAGCATGTTGGGCTTACGAAT 44625783 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCT 5176 ||| ||||| || ||||| ||||||||||||||||| |||| ||| ||| Sbjct 44625782 CACGTACTTCGCTTGTATGGAAGGAAAGGTGTATGATATTACAG-GTGAGCT 44625732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40208532338728