Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq1861 105 4e-20 seq150 105 4e-20 seq6 105 4e-20 seq7 102 5e-19 seq1800 96.9 2e-17 seq4 77.0 2e-11 >seq1861 Length=28369 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| Sbjct 25370 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCACGCGCTCTAGCTCCACCTCC 25429 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| | |||| || || |||||||||| Sbjct 25430 CCGACG-GAGCGGG-CG-AG-ACGGGCCGGT 25456 >seq150 Length=90500 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| Sbjct 84892 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCACGCGCTCTAGCTCCACCTCC 84951 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| | |||| || || |||||||||| Sbjct 84952 CCGACG-GAGCGGG-CG-AG-ACGGGCCGGT 84978 >seq6 Length=67274854 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| Sbjct 2581663 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCACGCGCTCTAGCTCCACCTCC 2581722 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||||| | |||| || || |||||||||| Sbjct 2581723 CCGACG-GAGCGGG-CG-AG-ACGGGCCGGT 2581749 >seq7 Length=63666967 Score = 102 bits (112), Expect = 5e-19 Identities = 79/89 (89%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 839 GCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCCCC 898 ||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| Sbjct 29943625 GCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCACGCGCTCTAGCTCCACCTCCCC 29943566 Query 899 GACGCGGTCGGGTCGTAGTACGGGCCGGT 927 |||| | |||| || || |||||||||| Sbjct 29943565 GACG-GAGCGGG-CG-AG-ACGGGCCGGT 29943541 >seq1800 Length=30095 Score = 96.9 bits (106), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||| ||||||||||||||||||||| |||| |||||| ||||||||||| Sbjct 25719 CTGCCCAGGCATATTTCACCATCTTTCGGGTCCTATCGCACGCGCTCTAGCTCCACCTCC 25778 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||| | |||| || || |||||||||| Sbjct 25779 ACGACG-GAGCGGG-CG-AG-ACGGGCCGGT 25805 >seq4 Length=75030901 Score = 77.0 bits (84), Expect = 2e-11 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCA 891 ||||||||||||||||||||||||||||||||||| |||| |||||| ||| || Sbjct 12126768 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTATCGCACGCGCTCTAGCTGCA 12126714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860626026706