Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-15 >seq6 Length=34628617 Score = 95.1 bits (104), Expect = 1e-15 Identities = 123/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAA-GAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||| | || || ||||| || ||||| ||| ||| | | ||||||||| || || | Sbjct 18779441 AGGCGCTTCGAGATGGATCGTGAACCCGCTGAG-GCCCGGTTCTGTGCTGAATGCAACCG 18779499 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||| || |||||||| ||| | ||||| || || |||||| ||||||| || Sbjct 18779500 TTACCATAGCGCCGAGGAAGGGGACCTGTGGGCTGAATCGAGCATGCTGGGCCTACGCAT 18779559 Query 5125 CACCTACTTTGCGCTG-ATGGATGGAAAGGTGTATGATATCACAG 5168 ||| |||||||| ||| |||||||| |||||||||||||| |||| Sbjct 18779560 CACATACTTTGC-CTGTATGGATGGCAAGGTGTATGATATTACAG 18779603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40210038750808