Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_001451.1 Length=27608 Score E Sequences producing significant alignments: (Bits) Value seq139329 206 5e-49 seq96645 161 2e-35 >seq139329 Length=1076 Score = 206 bits (228), Expect = 5e-49 Identities = 558/841 (66%), Gaps = 22/841 (3%) Strand=Plus/Minus Query 14112 AAGTTTTATGGCGGTTGGGACAACATGTTGAGAAACCTGATTCAGGGTGTTGAAGACCCA 14171 || || ||||| || |||||||| ||| | | ||| |||| | | ||| || | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 14172 ATTCTTATGGGTTGGGATTATCCTAAGTGTGATAGAGCAATGCCTAATTTGTTGCGTATA 14231 | | ||||| ||||| ||||| ||||| || | || |||||||| || | || || Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 14232 GCAGCATCCTTAGTACTTGCTCGCAAACACACTAACTGTTGTAGTTGGTCTGAACGCATT 14291 || | || | ||| | | | || |||| | ||||||| ||| | | Sbjct 954 GCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTTC 895 Query 14292 TATAGGTTGTATAATGAATGCGCCCAGGTCTTATCTGAAACTGTACTTGCTACAGGTGGT 14351 ||| | | | |||||| | || || || | | || ||||| | ||||||||| Sbjct 894 TATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGGC 835 Query 14352 ATTTATGTTAAACCTGGTGGCACTAGCAGTGGTGATGCTACTACTGCTTATGCAAACAGT 14411 ||||| | ||||||||||| || | |||||||| | |||||| || ||||| ||| Sbjct 834 TTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTCA 775 Query 14412 GTTTTTAACATAATACAAGCCACATCTGCTAATGTTG-CGCG-TCTTTTGAGTG--TTAT 14467 | ||||||||| | ||||| |||||||||||| | | |||| |||| || Sbjct 774 GCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATTCA 715 Query 14468 AACGCGTGATATTGTCTATGATAATATTAAGAGCTTGCAGTATGAATTGTATCAGCAGGT 14527 ||| | || | | ||| || ||||| | | ||| | | ||| | | Sbjct 714 AACACCTGTAA----CAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTG 659 Query 14528 CTACAGGCGAGTTAATTTTGACCCAGCCTTTGTTGAAAAGTTTTATTCTTACTTATGTAA 14587 ||| | | | | | || | |||||| | | | || | ||| ||| | || Sbjct 658 TTACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAA 599 Query 14588 GAATTTTTCGTTGATGATCTTGTCTGACGACGGTGTTGTTTGTTACAACAACACATTA-G 14646 | | || || ||||||| |||||||| || ||||| |||||||||||||| | |||| | Sbjct 598 GCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAA-AGATTATG 540 Query 14647 CCAAACAAGGTCTTGTAGCAGATATTTCTGGTTTTAGAGAGGTTCTCTACTATCAGAATA 14706 | | | ||| ||||||||| ||| || ||||| | ||| || |||||||| | Sbjct 539 CTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACA 480 Query 14707 ATGTTTTTATGGCTGATTCTAAATGTTGGGTTGAACCAGATTTAGAAAAAGGCCCACATG 14766 |||| |||||| || |||| |||||||| ||||||||| | | || ||||| | Sbjct 479 ATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACG 420 Query 14767 AGTTTTGTTCACAACACACAATGC-TAGTGGAGG--TTGATGGTGAGCCTAAGTATTTGC 14823 | |||||||||||||||||| | | | || ||| |||||||| || | ||||| | Sbjct 419 AATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGA--CT-ATTATTTAC 363 Query 14824 CATACCCAGACCCTTCACGCATTTTGGGTGCATGTGTTTTTGTAGATGACGTGGATAAGA 14883 | || |||||||| || | |||||| ||| |||||||||| |||||| | | ||||| Sbjct 362 CTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGA 303 Query 14884 CAGAACCTGTGGCTGTTATG---GAGCGTTATATAGCTCTTGCCATAGATGCTTATCCAC 14940 |||| || | | ||| || |||||| | | || || || ||||| ||||||| Sbjct 302 CAGACAACGT---TATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCAC 246 Query 14941 T 14941 | Sbjct 245 T 245 >seq96645 Length=1578 Score = 161 bits (178), Expect = 2e-35 Identities = 378/565 (67%), Gaps = 19/565 (3%) Strand=Plus/Minus Query 15948 GGTAAACAGAAGCGTACTACAGTACAAGGTCCTCCTGGCAGTGGTAAATCCCACTTTGCT 16007 ||||| || || ||| || | |||||||||||||| ||||||||||| || | || | Sbjct 731 GGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTT 672 Query 16008 ATAGGCCTTGCAGTATACTTTAGTAGCGCTCGTGTTGTTTTTACTGCATGTTCTCATGCA 16067 ||||| | | | || | | | ||| | |||||| || |||||||| |||||| Sbjct 671 ATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCA 612 Query 16068 GCTGTTGATGCTTTATGTGAAAAAGCTTTTAAGTTTCTTAAAGTTGATGATTGCACTCGT 16127 ||||| |||||||||||||||||||||| ||| |||| |||||| | || | | Sbjct 611 GCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGG 552 Query 16128 ATAGTACCCCAAAGGACTACTGTCGATTGCTTCTCAAAATTTAAAGCTAATGACAC--AG 16185 ||| |||| ||||| | | || ||||| | |||||| ||||| | || | Sbjct 551 ATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATACCAAT 492 Query 16186 GCAAAAAGTACATTTTTAGTACTATTAATGCCTTGCCGGAAGTTAGTTGTGATATTCTTT 16245 ||| || || | ||| | || ||||||| ||||| |||| || ||||| ||| | Sbjct 491 GCACAA--TATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTGTGG 434 Query 16246 TGGTTGACGAGGTTAGTATGTTGACCAATTACGAATTGTCCTTTATTAATGGTAAGATAA 16305 | || || || || |||| || || || || | |||| ||| ||| | | Sbjct 433 TTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACTGA 374 Query 16306 ATTACCAATATGTTGTGTATGTAGGTGATCCGGCTCAATTACCGGCACCCCGCACTTTAC 16365 ||| || || |||| ||||||||||| || ||| | || ||||| | || || Sbjct 373 GCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGA 314 Query 16366 TTAAT---GGTTCACTTTCTCCAAAGGATTATAATGTTGTCACAAACCTTATGGTTTGTG 16422 ||||| ||| |||| || |||| || |||||||| | || | | |||| Sbjct 313 TTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGA-----CTCAGAGGATGTG 259 Query 16423 TTAA-----ACCTGATATTTTCCTTGCA-AAGTGTTATCGTTGTCCTAAGGAAATTGTAG 16476 | || ||||||| | || ||||| || ||||| | || || |||||||| Sbjct 258 TAAACTAGGACCTGATGTATT-TTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTA 200 Query 16477 ACACTGTGTCTACTCTTGTTTATGA 16501 | || || ||| ||||||||||||| Sbjct 199 AAACAGTCTCTGCTCTTGTTTATGA 175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 87990372416315