Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_001846.1 Length=31357 Score E Sequences producing significant alignments: (Bits) Value seq139329 165 2e-36 >seq139329 Length=1076 Score = 165 bits (182), Expect = 2e-36 Identities = 554/843 (66%), Gaps = 32/843 (4%) Strand=Plus/Minus Query 15341 AAGTTCTATGGCGGTTGGGATGATATGTTACGCCGCCTTATTAAAGATGTTGATAGTCCT 15400 || |||||||| || ||||| ||||| || | | || ||||| |||| | | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 15401 GTACTCATGGGTTGGGACTATCCTAAATGTGATCGTGCTATGCCAAACATACTGCGTATT 15460 | ||||| ||||||||||| || || || |||||| |||| || || | || || Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 15461 GTTAGTAGTTTGGTGCTAGCCCGTAAACATGATTCGT-GCTGTTCGCATACGGATAGATT 15519 | | | |||| | | ||| || ||| || | ||| | |||| ||||| || Sbjct 954 GCTTCTGCCATGGTATTGGGTTCTAAGCAC-ATTGGTTGTTGTACACATAGTGATAGGTT 896 Query 15520 CTATCGTCTTGCGAACGAGTGCGCCCAAGTTTTGAGTGAAATTGTTATGTGTGGTGGTTG 15579 |||||| || | || |||| || ||||| | | || |||| ||| ||| | Sbjct 895 CTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGG 836 Query 15580 TTATTATGTTAAACCAGGTGGCACTAGTAGTGGGGATGCAACCACTGCTTTTGCTAATTC 15639 | |||| | ||||| ||||| || | |||||| || | || || || | |||||| || Sbjct 835 CTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTC 776 Query 15640 TGTGTTTAACATTTGTCAAGCTGTTTCCGCCAATGT----ATGCTCGCTTATGGCATGCA 15695 | |||||||| | |||||||||||| || ||||| | |||| ||| | || Sbjct 775 AGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTC--TTAGGAGTTG-- 720 Query 15696 ATGGACACAAAATTGAAGATTTGA--GTATACGCGAGTTACAAAAGCGCC---TATACTC 15750 || | ||| | | || | | || | || | |||| |||| |||| Sbjct 719 ATTCAAACACCTGTAACAATGTTACAGTTAAGGCCA--TACA---GCGCAAGATATATGA 665 Query 15751 TAATGTCTATCGTGCGGACCA-TGTTGACCCCGCATTTGTTAGT-GAGTATTATGAGTT- 15807 ||| || ||| | | || ||| || || ||||| ||| || |||| | |||| Sbjct 664 CAATTGTTACCGTA-GTAGCAGTGTGGATGACGACTTTGT-AGTCGAATATTTT-AGTTA 608 Query 15808 TTTAAATAAGCATTTTAGTATGATGATTTTGAGTGATGATGGTGTTGTGTGTTATAATTC 15867 ||||| ||||| || ||||||||||||| |||||||||||| || ||||| || Sbjct 607 TTTAAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAA 548 Query 15868 AGAGTTTGCGTCCAAGGGTTATATTGCTAATATAAGTGCCTTTCAACAGGTATTATATTA 15927 ||| | ||| |||||| | || | || |||| ||| | ||||||| Sbjct 547 AGATTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTA 488 Query 15928 TCAAAATAATGTGTTTATGTCTGAGGCCAAATGTTGGGTAGAAACAGACATCGAAAAGGG 15987 ||| || ||||||||||||||| || || |||||||||||| |||| | | ||| Sbjct 487 TCAGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGG 428 Query 15988 ACCGCATGAATTTTGTTCTCAACATACAATGCTAGT--CAAGA-TGGATGGTGATGAAGT 16044 ||| || ||||||||||| ||||| ||| | | | | | || |||||||| | Sbjct 427 ACCACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTA--- 371 Query 16045 CTACCTTCCATACCCTGATCCTTCGAGAATCTTAGGAGCAGGCTGTTTTGTTGATGATTT 16104 || | || || || || || || ||||| || |||||| |||||||||||| | Sbjct 370 TTATTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACAT 311 Query 16105 ATTAAAGACTGATAGCGTTCTCTTGATAGAGCGTTTCGTAAGTCTTGCAATTGATGCTTA 16164 | ||||| || | |||| || || | || |||| || || ||||||||||| || Sbjct 310 TGTTAAGACAGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATA 251 Query 16165 TCC 16167 ||| Sbjct 250 TCC 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99944507227090