Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_002016.1 Length=1027 Score E Sequences producing significant alignments: (Bits) Value seq197496 1467 0.0 >seq197496 Length=1027 Score = 1467 bits (1626), Expect = 0.0 Identities = 941/1026 (92%), Gaps = 0/1026 (0%) Strand=Plus/Minus Query 1 AGCGAAAGCAGGTAGATATTGAAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCT 60 ||| ||||||||||||| || ||||||||| ||||||||||||||||||||||| ||||| Sbjct 1026 AGCAAAAGCAGGTAGATGTTTAAAGATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCT 967 Query 61 CTCTATCATCCCGTCAGGCCCCCTCAAAGCCGAGATCGCACAGAGACTTGAAGATGTCTT 120 ||||||| | |||||||||||||||||||||||||| || ||||||||||||||||| || Sbjct 966 CTCTATCGTTCCGTCAGGCCCCCTCAAAGCCGAGATAGCGCAGAGACTTGAAGATGTTTT 907 Query 121 TGCAGGGAAGAACACCGATCTTGAGGTTCTCATGGAATGGCTAAAGACAAGACCAATCCT 180 ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 906 TGCAGGGAAAAACACCGATCTTGAGGCACTCATGGAATGGCTAAAGACAAGACCAATCCT 847 Query 181 GTCACCTCTGACTAAGGGGATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCG 240 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 846 GTCACCTCTGACTAAGGGGATTTTAGGATTTGTATTCACGCTCACCGTGCCCAGTGAGCG 787 Query 241 AGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTTAATGGGAACGGGGATCCAAATAA 300 ||||||||||||||||||||||||||| |||||||| ||||||||||| || || || || Sbjct 786 AGGACTGCAGCGTAGACGCTTTGTCCAGAATGCCCTCAATGGGAACGGTGACCCGAACAA 727 Query 301 CATGGACAAAGCAGTTAAACTGTATAGGAAGCTCAAGAGGGAGATAACATTCCATGGGGC 360 |||||||||||| || |||||||| || || ||||| ||||| ||||||||||| ||||| Sbjct 726 CATGGACAAAGCGGTCAAACTGTACAGAAAACTCAAAAGGGAAATAACATTCCACGGGGC 667 Query 361 CAAAGAAATCTCACTCAGTTATTCTGCTGGTGCACTTGCCAGTTGTATGGGCCTCATATA 420 ||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 666 CAAAGAAGTAGCGCTCAGTTATTCTGCTGGTGCACTTGCCAGTTGCATGGGCCTCATATA 607 Query 421 CAACAGGATGGGGGCTGTGACCACTGAAGTGGCATTTGGCCTGGTATGTGCAACCTGTGA 480 |||||| |||||| |||| |||||||| ||||||||||| || ||||| ||||||||||| Sbjct 606 CAACAGAATGGGGACTGTCACCACTGAGGTGGCATTTGGTCTAGTATGCGCAACCTGTGA 547 Query 481 ACAGATTGCTGACTCCCAGCATCGGTCTCATAGGCAAATGGTGACAACAACCAACCCACT 540 |||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct 546 ACAGATTGCTGATTCCCAGCATCGATCTCATAGACAAATGGTGACAACAACCAATCCACT 487 Query 541 AATCAGACATGAGAACAGAATGGTTTTAGCCAGCACTACAGCTAAGGCTATGGAGCAAAT 600 |||||| ||||||||||||||||| ||||||||||| || ||||| || ||||| ||||| Sbjct 486 AATCAGGCATGAGAACAGAATGGTATTAGCCAGCACAACGGCTAAAGCCATGGAACAAAT 427 Query 601 GGCTGGATCGAGTGAGCAAGCAGCAGAGGCCATGGAGGTTGCTAGTCAGGCTAGGCAAAT 660 ||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||| Sbjct 426 GGCTGGATCAAGTGAACAAGCAGCAGAGGCCATGGAGGTTGCCAGCCAGGCTAGGCAAAT 367 Query 661 GGTGCAAGCGATGAGAACCATTGGGACTCATCCTAGCTCCAGTGCTGGTCTGAAAAATGA 720 ||| || || |||||||| ||||||||||| ||||| |||||||||||||| ||| |||| Sbjct 366 GGTACAGGCAATGAGAACAATTGGGACTCACCCTAGTTCCAGTGCTGGTCTAAAAGATGA 307 Query 721 TCTTCTTGAAAATTTGCAGGCCTATCAGAAACGAATGGGGGTGCAGATGCAACGGTTCAA 780 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 306 TCTTCTTGAAAATTTACAGGCCTATCAGAAGCGAATGGGGGTGCAGATGCAACGATTCAA 247 Query 781 GTGATCCTCTCGCTATTGCCGCAAATATCATTGGGATCTTGCACTTGATATTGTGGATTC 840 |||||||||||| | |||||||| ||||||||||| |||||| ||||||||||||||| Sbjct 246 GTGATCCTCTCGTTGCTGCCGCAAGCATCATTGGGATTTTGCACCTGATATTGTGGATTC 187 Query 841 TTGATCGTCtttttttCAAATGCATTTACCGTCGCTTTAAATACGGACTGAAAGGAGGGC 900 |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 186 TTGATCGTCTTTTTTTCAAATGCATTTACCGTCGCTTTAAATACGGTTTGAAAAGAGGGC 127 Query 901 CTTCTACGGAAGGAGTGCCAAAGTCTATGAGGGAAGAATATCGAAAGGAACAGCAGAGTG 960 ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||| Sbjct 126 CTTCTACGGAAGGAGTGCCGGAGTCTATGAGGGAAGAATATCGGCAGAAACAGCAGAGTG 67 Query 961 CTGTGGATGCTGACGATGGTCATTTTGTCAGCATAGAGCTGGAGTAAAAAACTACCTTGT 1020 ||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||| Sbjct 66 CTGTGGATGTTGACGATGGTCATTTTGTCAACATAGTGCTAGAGTAAAAAACTACCTTGT 7 Query 1021 TTCTAC 1026 |||||| Sbjct 6 TTCTAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3173184851690