Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_002017.1 Length=1778 Score E Sequences producing significant alignments: (Bits) Value seq197579 1088 0.0 >seq197579 Length=1067 Score = 1088 bits (1206), Expect = 0.0 Identities = 881/1066 (83%), Gaps = 0/1066 (0%) Strand=Plus/Plus Query 390 GAGCAATTGAGCTCAGTGTCATCATTCGAAAGATTCGAAATATTTCCCAAAGAAAGCTCA 449 ||||| |||||||||||||||||||| ||||||||||| ||||| ||||| ||| || Sbjct 2 GAGCAGTTGAGCTCAGTGTCATCATTTGAAAGATTCGAGATATTCCCCAAGACAAGTTCG 61 Query 450 TGGCCCAACCACAACACAACCAAAGGAGTAACGGCAGCATGCTCCCATGCGGGGAAAAGC 509 |||||| | || | |||| || ||| || |||||||||||| | |||| || || | Sbjct 62 TGGCCCGATCATGAAACAAACAGAGGTGTGACGGCAGCATGCCCTTATGCTGGAGCAAAC 121 Query 510 AGTTTTTACAGAAATTTGCTATGGCTGACGGAGAAGGAGGGCTCATACCCAAAGCTGAAA 569 || || ||||||||||| |||||||| | | || | |||||||||||||| | Sbjct 122 AGCTTCTACAGAAATTTAATATGGCTGGTGAAAAAAGGAAATTCATACCCAAAGCTCAGC 181 Query 570 AATTCTTATGTGAACAAGAAAGGGAAAGAAGTCCTTGTACTGTGGGGTATTCATCACCCG 629 || || ||||| ||||| |||||||| ||||||||||| || ||||| |||||||| || Sbjct 182 AAATCCTATGTTAACAATAAAGGGAAGGAAGTCCTTGTGCTATGGGGCATTCATCATCCA 241 Query 630 TCTAACAGTAAGGATCAACAGAATATCTATCAGAATGAAAATGCTTATGTCTCTGTAGTG 689 ||| ||||| |||||||| | | |||| || |||| | |||| ||||| | ||||| | Sbjct 242 CCTACCAGTACTGATCAACAAAGTCTCTACCAAAATGCAGATGCCTATGTTTTTGTAGGG 301 Query 690 ACTTCAAATTATAACAGGAGATTTACCCCGGAAATAGCAGAAAGACCCAAAGTAAGAGAT 749 | ||||| |||||||| | || | || |||||||||| ||||||||| || |||| | Sbjct 302 TCATCAAAATATAACAGAAAGTTCAAGCCAGAAATAGCAGCAAGACCCAAGGTGAGAGGT 361 Query 750 CAAGCTGGGAGGATGAACTATTACTGGACCTTGCTAAAACCCGGAGACACAATAATATTT 809 ||||| ||||||||||||||||||||||| | || |||| ||||||||||||| |||| Sbjct 362 CAAGCAGGGAGGATGAACTATTACTGGACACTAATAGAACCTGGAGACACAATAACATTT 421 Query 810 GAGGCAAATGGAAATCTAATAGCACCAAGGTATGCTTTCGCACTGAGTAGAGGCTTTGGG 869 || |||| |||||||||| | | |||||| |||||||||||| ||| |||||| | ||| Sbjct 422 GAAGCAACTGGAAATCTAGTGGTACCAAGATATGCTTTCGCAATGAATAGAGGTTCTGGA 481 Query 870 TCCGGCATCATCACCTCAAACGCATCAATGCATGAGTGTAACACGAAGTGTCAAACACCC 929 || || || || | || | ||| || | ||||| |||||||||||||||||||||||| Sbjct 482 TCTGGTATTATAATTTCGGATGCACCAGTTCATGATTGTAACACGAAGTGTCAAACACCC 541 Query 930 CTGGGAGCTATAAACAGCAGTCTCCCTTTCCAGAATATACACCCAGTCACAATAGGAGAG 989 ||| || ||||||| ||| ||||| || ||||||||||| ||||||||||| ||||| Sbjct 542 AAGGGTGCCATAAACACCAGCCTCCCATTTCAGAATATACATCCAGTCACAATTGGAGAA 601 Query 990 TGCCCAAAATACGTCAGGAGTGCCAAATTGAGGATGGTTACAGGACTAAGGAACATTCCG 1049 || |||||||| |||| || | |||||||| |||| ||||||||||||||| || ||| Sbjct 602 TGTCCAAAATATGTCAAAAGCACAAAATTGAGAATGGCTACAGGACTAAGGAATATCCCG 661 Query 1050 TCCATTCAATCCAGAGGTCTATTTGGAGCCATTGCCGGTTTTATTGAAGGGGGATGGACT 1109 || |||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| Sbjct 662 TCTATTCAATCTAGAGGTCTGTTTGGAGCCATTGCTGGTTTTATTGAGGGGGGATGGACA 721 Query 1110 GGAATGATAGATGGATGGTACGGTTATCATCATCAGAATGAACAGGGATCAGGCTATGCA 1169 |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| Sbjct 722 GGAATGATAGATGGATGGTATGGTTATCACCATCAGAATGAACAGGGATCAGGATATGCA 781 Query 1170 GCGGATCAAAAAAGCACACAAAATGCCATTAACGGGATTACAAACAAGGTGAACTCTGTT 1229 ||||| |||| |||||||||||||||||| ||||||| || ||||| || || |||||| Sbjct 782 GCGGACCAAAGGAGCACACAAAATGCCATTGACGGGATCACTAACAAAGTAAATTCTGTT 841 Query 1230 ATCGAGAAAATGAACATTCAATTCACAGCTGTGGGTAAAGAATTCAACaaattagaaaaa 1289 || || || ||||||| |||||||| || |||||||||||||||||| | || |||||| Sbjct 842 ATTGAAAAGATGAACACGCAATTCACGGCAGTGGGTAAAGAATTCAACCACTTGGAAAAA 901 Query 1290 aggatggaaaatttaaataaaaaaGTTGATGATGGATTTCTGGACATTTGGACATATAAT 1349 || || || |||||||| ||||| ||||||||||| |||||||| ||||||||||| ||| Sbjct 902 AGAATAGAGAATTTAAACAAAAAGGTTGATGATGGTTTTCTGGATATTTGGACATACAAT 961 Query 1350 GCAGAATTGTTAGTTCTACTGGAAAATGAAAGGACTCTGGATTTCCATGACTCAAATGTG 1409 |||||| |||| |||||| ||||||||||||| |||||||||||||| ||||| ||||| Sbjct 962 GCAGAACTGTTGGTTCTATTGGAAAATGAAAGAACTCTGGATTTCCACGACTCGAATGTA 1021 Query 1410 AAGAATCTGTATGAGAAAGTAAAAAGCCAATTAAAGAATAATGCCA 1455 ||||| |||||||||||||||| |||||| ||| ||| ||||||| Sbjct 1022 AAGAACCTGTATGAGAAAGTAAGAAGCCAGCTAAGGAACAATGCCA 1067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5567034137120