Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_002019.1 Length=1565 Score E Sequences producing significant alignments: (Bits) Value seq209859 1442 0.0 >seq209859 Length=1262 Score = 1442 bits (1598), Expect = 0.0 Identities = 1073/1262 (85%), Gaps = 0/1262 (0%) Strand=Plus/Plus Query 200 ATGAGGGACGGTTGATCCAAAACAGCTTAACAATAGAGAGAATGGTGCTCTCTGCTTTTG 259 |||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGAGGGACGACTGATTCAAAATAGCATAACAATAGAGAGAATGGTGCTCTCTGCTTTTG 60 Query 260 ACGAAAGGAGAAATAAATACCTGGAAGAACATCCCAGTGCGGGGAAGGATCCTAAGAAAA 319 |||| || || ||||||||||| ||||| ||||||||||| ||||| ||||||||||||| Sbjct 61 ACGAGAGAAGGAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAAGATCCTAAGAAAA 120 Query 320 CTGGAGGACCTATATACAGAAGAGTAAACGGAAAGTGGATGAGAGAACTCATCCTTTATG 379 |||||||||| ||||| | |||| || ||||||| |||||||| |||||||||||||||| Sbjct 121 CTGGAGGACCCATATATAAAAGAATAGACGGAAAATGGATGAGGGAACTCATCCTTTATG 180 Query 380 ACAAAGAAGAAATAAGGCGAATCTGGCGCCAAGCTAATAATGGTGACGATGCAACGGCTG 439 ||||||||||||||||| || | ||||||||||| || |||||||| |||||||| || | Sbjct 181 ACAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCCAACAATGGTGAAGATGCAACAGCCG 240 Query 440 GTCTGACTCACATGATGATCTGGCATTCCAATTTGAATGATGCAACTTATCAGAGGACAA 499 | || || || || ||||| ||||| |||||| |||||||||| || |||||||| |||| Sbjct 241 GCCTTACCCATATTATGATTTGGCACTCCAATCTGAATGATGCCACCTATCAGAGAACAA 300 Query 500 GGGCTCTTGTTCGCACCGGAATGGATCCCAGGATGTGCTCTCTGATGCAAGGTTCAACTC 559 | |||||||||||||| || ||||||||||| |||||||| || |||||||||||||| | Sbjct 301 GAGCTCTTGTTCGCACTGGGATGGATCCCAGAATGTGCTCCCTAATGCAAGGTTCAACAC 360 Query 560 TCCCTAGGAGGTCTGGAGCCGCAGGTGCTGCAGTCAAAGGAGTTGGAACAATGGTGATGG 619 | || || |||||||||||||||||||||||||| ||||||||||||||||| | ||||| Sbjct 361 TTCCCAGAAGGTCTGGAGCCGCAGGTGCTGCAGTAAAAGGAGTTGGAACAATAGCGATGG 420 Query 620 AATTGGTCAGGATGATCAAACGTGGGATCAATGATCGGAACTTCTGGAGGGGTGAGAATG 679 | || |||| ||||||||||||||||||||||| || ||||||||||||||||| |||| Sbjct 421 AGTTAATCAGAATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAAAATG 480 Query 680 GACGAAAAACAAGAATTGCTTATGAAAGAATGTGCAACATTCTCAAAGGGAAATTTCAAA 739 |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 481 GACGAAGGACAAGGATTGCATATGAAAGAATGTGCAACATTCTCAAAGGGAAATTTCAGA 540 Query 740 CTGCTGCACAAAAAGCAATGATGGATCAAGTGAGAGAGAGCCGGGACCCAGGGAATGCTG 799 | |||||||| | ||||||||||||||||||||||| || ||| ||||||| || |||| Sbjct 541 CAGCTGCACAGAGGGCAATGATGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAACGCTG 600 Query 800 AGTTCGAAGATCTCACTTTTCTAGCACGGTCTGCACTCATATTGAGAGGGTCGGTTGCTC 859 | | |||||||| | ||| || |||||||| |||||||| || |||||||| ||||| | Sbjct 601 AAATTGAAGATCTTATTTTCCTGGCACGGTCAGCACTCATTTTAAGAGGGTCAGTTGCAC 660 Query 860 ACAAGTCCTGNNNNNNNNNNNNNNNNNNNNGACCTGCCGTAGCCAGTGGGTACGACTTTG 919 | ||||| || | | ||| ||||| |||||| | ||||||| Sbjct 661 ATAAGTCTTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCGAGTGGGCATGACTTTG 720 Query 920 AAAGAGAGGGATACTCTCTAGTCGGAATAGACCCTTTCAGACTGCTTCAAAACAGCCAAG 979 ||||||| ||||| ||||| ||||| |||||||| |||| ||| ||||||||||| |||| Sbjct 721 AAAGAGAAGGATATTCTCTGGTCGGGATAGACCCCTTCAAACTACTTCAAAACAGTCAAG 780 Query 980 TGTACAGCCTAATCAGACCAAATGAGAATCCAGCACACAAGAGTCAACTGGTGTGGATGG 1039 | | ||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| Sbjct 781 TATTCAGCCTAATCAGACCAAATGAAAACCCAGCTCACAAGAGTCAACTGGTGTGGATGG 840 Query 1040 CATGCCATTCTGCCGCATTTGAAGATCTAAGAGTATTGAGCTTCATCAAAGGGACGAAGG 1099 | ||||| |||||||||||||| ||| ||||||||| ||||||| | ||||| || | Sbjct 841 CTTGCCACTCTGCCGCATTTGAGGATTTAAGAGTATCAGGCTTCATAAGAGGGAAAAAAG 900 Query 1100 TGGTCCCAAGAGGGAAGCTTTCCACTAGAGGAGTTCAAATTGCTTCCAATGAAAATATGG 1159 |||| |||||||| | ||||||||| ||||| ||||| |||||||| ||||| ||| ||| Sbjct 901 TGGTTCCAAGAGGAAGGCTTTCCACAAGAGGGGTTCAGATTGCTTCAAATGAGAATGTGG 960 Query 1160 AGACTATGGAATCAAGTACACTTGAACTGAGAAGCAGGTACTGGGCCATAAGGACCAGAA 1219 | ||||||| || ||||| || ||||| || |||||||||||||||||||||||||||| Sbjct 961 AAGCTATGGACTCTAGTACCCTGGAACTAAGGAGCAGGTACTGGGCCATAAGGACCAGAA 1020 Query 1220 GTGGAGGAAACACCAATCAACAGAGGGCATCTGCGGGCCAAATCAGCATACAACCTACGT 1279 | || ||||| ||||||||||||| |||||| || ||||| ||||| | |||||||| | Sbjct 1021 GCGGGGGAAATACCAATCAACAGAAGGCATCCGCAGGCCAGATCAGTGTGCAACCTACAT 1080 Query 1280 TCTCAGTACAGAGAAATCTCCCTTTTGACAGAACAACCGTTATGGCAGCATTCACTGGGA 1339 |||||||||| || |||||||||||||| ||| | |||||||||||||| |||| |||| Sbjct 1081 TCTCAGTACAAAGGAATCTCCCTTTTGAGAGAGCGACCGTTATGGCAGCTTTCATTGGGG 1140 Query 1340 ATACAGAGGGGAGAACATCTGACATGAGGACCGAAATCATAAGGATGATGGAAAGTGCAA 1399 | | ||||| | ||||| || ||| | || |||||||||||||||||||||||||||| Sbjct 1141 ACAATGAGGGACGGACATCAGATATGCGAACTGAAATCATAAGGATGATGGAAAGTGCAA 1200 Query 1400 GACCAGAAGATGTGTCTTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAG 1459 ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 AGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAA 1260 Query 1460 CG 1461 || Sbjct 1261 CG 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4887115403630