Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_002021.1 Length=2341 Score E Sequences producing significant alignments: (Bits) Value seq205407 1936 0.0 >seq205407 Length=1958 Score = 1936 bits (2146), Expect = 0.0 Identities = 1604/1958 (82%), Gaps = 0/1958 (0%) Strand=Plus/Plus Query 383 ACAAGCTGACACAAGGCCGACAGACCTATGACTGGACTTTAAATAGAAACCAGCCTGCTG 442 |||| || || ||||| || || || ||||| ||||| ||||| ||||| || || || | Sbjct 1 ACAAACTAACCCAAGGTCGCCAAACTTATGATTGGACATTAAACAGAAATCAACCGGCAG 60 Query 443 CAACAGCATTGGCCAACACAATAGAAGTGTTCAGATCAAATGGCCTCACGGCCAATGAGT 502 |||| ||||| |||||||| |||||||| || ||||| || || | || || ||||| | Sbjct 61 CAACTGCATTAGCCAACACCATAGAAGTCTTTAGATCGAACGGATTAACAGCTAATGAAT 120 Query 503 CTGGAAGGCTCATAGACTTCCTTAAGGATGTAATGGAGTCAATGAAAAAAGAAGAAATGG 562 | |||||||| ||||| ||||| |||||||| ||||| |||||| | ||||| ||||||| Sbjct 121 CAGGAAGGCTAATAGATTTCCTCAAGGATGTGATGGAATCAATGGATAAAGAGGAAATGG 180 Query 563 GGATCACAACTCATTTTCAGAGAAAGAGACGGGTGAGAGACAATATGACTAAGAAAATGA 622 ||| ||||| || ||||| ||||| || | || || ||||| ||||| ||||||||| Sbjct 181 AGATAACAACACACTTTCAAAGAAAAAGGAGAGTAAGGGACAACATGACCAAGAAAATGG 240 Query 623 TAACACAGAGAACAATAGGTAAAAGGAAACAGAGATTGAACAAAAGGAGTTATCTAATTA 682 | ||||| ||||||||||| || | || || ||| |||| || || | || ||||| | Sbjct 241 TCACACAAAGAACAATAGGGAAGAAAAAGCAAAGAGTGAATAAGAGAGGCTACCTAATAA 300 Query 683 GAGCATTGACCCTGAACACAATGACCAAAGATGCTGAGAGAGGGAAGCTAAAACGGAGAG 742 |||| ||||| ||||||| |||||||||||||| |||||||| || ||||| | || | Sbjct 301 GAGCTTTGACATTGAACACGATGACCAAAGATGCAGAGAGAGGCAAATTAAAAAGAAGGG 360 Query 743 CAATTGCAACCCCAGGGATGCAAATAAGGGGGTTTGTATACTTTGTTGAGACACTGGCAA 802 | |||||||| || ||||||||||| || ||||| || ||||| ||||| || | || | Sbjct 361 CTATTGCAACACCCGGGATGCAAATTAGAGGGTTCGTGTACTTCGTTGAAACTTTAGCTA 420 Query 803 GGAGTATATGTGAGAAACTTGAACAATCAGGGTTGCCAGTTGGAGGCAATGAGAAGAAAG 862 | || || || || || ||||||||||| || | || ||||| || ||||| ||||| | Sbjct 421 GAAGCATTTGCGAAAAGCTTGAACAATCTGGACTTCCGGTTGGGGGTAATGAAAAGAAGG 480 Query 863 CAAAGTTGGCAAATGTTGTAAGGAAGATGATGACCAATTCTCAGGACACCGAACTTTCTT 922 | || ||||||||||||| || || |||||||| ||||| || ||||| || ||||||| Sbjct 481 CCAAACTGGCAAATGTTGTGAGAAAAATGATGACTAATTCACAAGACACAGAGCTTTCTT 540 Query 923 TGACCATCACTGGAGATAACACCAAATGGAACGAAAATCAGAATCCTCGGATGTTTTTGG 982 | || |||||||| || ||||| || ||||| |||||||| || || || |||||||||| Sbjct 541 TCACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAACCCCCGAATGTTTTTGG 600 Query 983 CCATGATCACATATATGACCAGAAATCAGCCCGAATGGTTCAGAAATGTTCTAAGTATTG 1042 | ||||| ||||| || || | ||||| || |||||||||||||| | || || || | Sbjct 601 CGATGATTACATACATCACAAAGAATCAACCTGAATGGTTCAGAAACATCCTGAGCATCG 660 Query 1043 CTCCAATAATGTTCTCAAACAAAATGGCGAGACTGGGAAAAGGGTATATGTTTGAGAGCA 1102 | |||||||||||||||||||||||||| |||||||||||||| || ||||| ||||| | Sbjct 661 CACCAATAATGTTCTCAAACAAAATGGCAAGACTGGGAAAAGGATACATGTTCGAGAGTA 720 Query 1103 AGAGTATGAAACTTAGAACTCAAATACCTGCAGAAATGCTAGCAAGCATTGATTTGAAAT 1162 |||| ||||| || | || |||||||||||||||||||||||||||||||| |||| | Sbjct 721 AGAGAATGAAGCTCCGGACACAAATACCTGCAGAAATGCTAGCAAGCATTGACCTGAAGT 780 Query 1163 ATTTCAATGATTCAACAAGAAAGAAGATTGAAAAAATCCGACCGCTCTTAATAGAGGGGA 1222 |||||||||| |||||||| ||||| ||||| ||||| | || || ||||||| || | Sbjct 781 ATTTCAATGAATCAACAAGGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCA 840 Query 1223 CTGCATCATTGAGCCCTGGAATGATGATGGGCATGTTCAATATGTTAAGCACTGTATTAG 1282 | |||||||||||||||||||||||||||||||||||||| ||| |||| || || |||| Sbjct 841 CAGCATCATTGAGCCCTGGAATGATGATGGGCATGTTCAACATGCTAAGTACAGTTTTAG 900 Query 1283 GCGTCTCCATCCTGAATCTTGGACAAAAGAGATACACCAAGACTACTTACTGGTGGGATG 1342 | ||||| || ||||||||||||||||||| |||||||||||| || ||||||||||||| Sbjct 901 GAGTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAACATACTGGTGGGATG 960 Query 1343 GTCTTCAATCCTCTGACGATTTTGCTCTGATTGTGAATGCACCCAATCATGAAGGGATTC 1402 | || |||||||| ||||||||||| || || ||||||||||| |||||||| || || | Sbjct 961 GGCTCCAATCCTCAGACGATTTTGCCCTCATAGTGAATGCACCAAATCATGAGGGAATAC 1020 Query 1403 AAGCCGGAGTCGACAGGTTTTATCGAACCTGTAAGCTACATGGAATCAATATGAGCAAGA 1462 |||| ||||| || || || || | ||||| ||| || |||||||| |||||||| | Sbjct 1021 AAGCAGGAGTGGATAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAA 1080 Query 1463 AAAAGTCTTACATAAACAGAACAGGTACATTTGAATTCACAAGTTTTTTCTATCGTTATG 1522 | ||||| || ||||| | |||||| |||||||||||||| || ||||| ||||| |||| Sbjct 1081 AGAAGTCCTATATAAATAAAACAGGGACATTTGAATTCACTAGCTTTTTTTATCGATATG 1140 Query 1523 GGTTTGTTGCCAATTTCAGCATGGAGCTTCCCAGTTTTGGTGTGTCTGGGAGCAACGAGT 1582 | ||||| || ||||| ||||||||||| || |||||||| |||||||| | ||||||| Sbjct 1141 GATTTGTGGCTAATTTTAGCATGGAGCTGCCAAGTTTTGGAGTGTCTGGAATAAACGAGT 1200 Query 1583 CAGCGGACATGAGTATTGGAGTTACTGTCATCAAAAACAATATGATAAACAATGATCTTG 1642 |||| |||||||| |||||||| || || || || ||||| |||||||||||||| |||| Sbjct 1201 CAGCTGACATGAGCATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTG 1260 Query 1643 GTCCAGCAACAGCTCAAATGGCCCTTCAGTTGTTCATCAAAGATTACAGGTACACGTACC 1702 | ||||||||||| |||||||| || || |||||||||||||||||||| ||||| || | Sbjct 1261 GACCAGCAACAGCCCAAATGGCTCTCCAATTGTTCATCAAAGATTACAGATACACATATC 1320 Query 1703 GATGCCATAGAGGTGACACACAAATACAAACCCGAAGATCATTTGAAATAAAGAAACTGT 1762 | ||||||||||| ||||||||||| ||||| |||||||||| || |||||||| |||| Sbjct 1321 GGTGCCATAGAGGAGACACACAAATCCAAACGAGAAGATCATTCGAGATAAAGAAGCTGT 1380 Query 1763 GGGAGCAAACCCGTTCCAAAGCTGGACTGCTGGTCTCCGACGGAGGCCCAAATTTATACA 1822 |||| ||||||| || | | ||||| |||| || || || || ||||| ||||||| Sbjct 1381 GGGATCAAACCCAATCAAGGACAGGACTATTGGTATCAGATGGGGGACCAAACTTATACA 1440 Query 1823 ACATTAGAAATCTCCACATTCCTGAAGTCTGCCTAAAATGGGAATTGATGGATGAGGATT 1882 | || | ||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||| Sbjct 1441 ATATCCGGAATCTTCACATCCCTGAAGTCTGCTTAAAGTGGGAGCTGATGGATGAGAATT 1500 Query 1883 ACCAGGGGCGTTTATGCAACCCACTGAACCCATTTGTCAGCCATAAAGAAATTGAATCAA 1942 | | ||| | | || || || ||||| || ||||||||||||||||||||||| || Sbjct 1501 ATCGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGCCATAAAGAAATTGAGTCTG 1560 Query 1943 TGAACAATGCAGTGATGATGCCAGCACATGGTCCAGCCAAAAACATGGAGTATGATGCTG 2002 | |||||||| || | |||||||| |||||||| ||||||| ||||| |||||||| | Sbjct 1561 TAAACAATGCTGTAGTAATGCCAGCCCATGGTCCGGCCAAAAGTATGGAATATGATGCCG 1620 Query 2003 TTGCAACAACACACTCCTGGATCCCCAAAAGAAATCGATCCATCTTGAATACAAGTCAAA 2062 ||||||| |||||||||||||| |||||||| || || || || | || ||||| |||| Sbjct 1621 TTGCAACTACACACTCCTGGATTCCCAAAAGGAACCGCTCTATTCTAAACACAAGCCAAA 1680 Query 2063 GAGGAGTACTTGAAGATGAACAAATGTACCAAAGGTGCTGCAATTTATTTGAAAAATTCT 2122 | ||| | ||||| |||||||| |||||||| | ||||||||| || || || ||||| | Sbjct 1681 GGGGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACTTGTTCGAGAAATTTT 1740 Query 2123 TCCCCAGCAGTTCATACAGAAGACCAGTCGGGATATCCAGTATGGTGGAGGCTATGGTTT 2182 |||| || |||||||| || ||||| | || || || || ||||||||||| ||||| | Sbjct 1741 TCCCTAGTAGTTCATATAGGAGACCGATTGGAATTTCTAGCATGGTGGAGGCCATGGTGT 1800 Query 2183 CCAGAGCCCGAATTGATGCACGGATTGATTTCGAATCTGGAAGGATAAAGAAAGAAGAGT 2242 | || ||||| |||||||| | ||||| ||||| ||||||||||| ||||| ||||||| Sbjct 1801 CTAGGGCCCGGATTGATGCCAGAATTGACTTCGAGTCTGGAAGGATTAAGAAGGAAGAGT 1860 Query 2243 TCACTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCAGACGGCAAAAATAGTGAA 2302 || |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1861 TCTCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAATGAA 1920 Query 2303 TTTAGCTTGTCCTTCATGAAAAAATGCCTTGTTCCTAC 2340 ||||||||||||||||||||||||||||||||| |||| Sbjct 1921 TTTAGCTTGTCCTTCATGAAAAAATGCCTTGTTTCTAC 1958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7364190226110