Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_002022.1 Length=2233 Score E Sequences producing significant alignments: (Bits) Value seq208890 2881 0.0 >seq208890 Length=2206 Score = 2881 bits (3194), Expect = 0.0 Identities = 1962/2205 (89%), Gaps = 0/2205 (0%) Strand=Plus/Minus Query 1 AGCGAAAGCAGGTACTGATCCAAAATGGAAGATTTTGTGCGACAATGCTTCAATCCGATG 60 ||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||||| Sbjct 2205 AGCAAAAGCAGGTACTGATTCGAAATGGAAGATTTTGTGCGACAATGCTTCAACCCGATG 2146 Query 61 ATTGTCGAGCTTGCGGAAAAAACAATGAAAGAGTATGGGGAGGACCTGAAAATCGAAACA 120 |||||||| ||||| |||||| |||||||||||||||||||||| |||||||| ||||| Sbjct 2145 ATTGTCGAACTTGCAGAAAAAGCAATGAAAGAGTATGGGGAGGATCTGAAAATTGAAACC 2086 Query 121 AACAAATTTGCAGCAATATGCACTCACTTGGAAGTATGCTTCATGTATTCAGATTTCCAC 180 |||||||||||||||||||| ||||||||||| || || |||||||||||||||||||| Sbjct 2085 AACAAATTTGCAGCAATATGTACTCACTTGGAGGTGTGTTTCATGTATTCAGATTTCCAT 2026 Query 181 TTCATCAATGAGCAAGGCGAGTCAATAATCGTAGAACTTGGTGATCCTAATGCACTTTTG 240 ||||||||||| |||||||| |||||| | |||||||||| ||||| |||||||| | Sbjct 2025 TTCATCAATGAACAAGGCGAATCAATAGTGGTAGAACTTGACGATCCAAATGCACTGCTA 1966 Query 241 AAGCACAGATTTGAAATAATCGAGGGAAGAGATCGCACAATGGCCTGGACAGTAGTAAAC 300 |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| Sbjct 1965 AAGCACAGATTTGAAATAATCGAGGGGAGAGACAGAACAATGGCCTGGACAGTAGTAAAC 1906 Query 301 AGTATTTGCAACACTACAGGGGCTGAGAAACCAAAGTTTCTACCAGATTTGTATGATTAC 360 ||||| ||||||||||| || |||| ||||| ||||||||||| ||||||||||||||| Sbjct 1905 AGTATCTGCAACACTACTGGAGCTGGAAAACCGAAGTTTCTACCGGATTTGTATGATTAC 1846 Query 361 AAGGAAAATAGATTCATCGAAATTGGAGTAACAAGGAGAGAAGTTCACATATACTATCTG 420 || || || |||||||||||||||||||| |||||||||||||| |||||||| || || Sbjct 1845 AAAGAGAACAGATTCATCGAAATTGGAGTGACAAGGAGAGAAGTCCACATATATTACCTT 1786 Query 421 GAAAAGGCCAATAAAATTAAATCTGAGAAAACACACATCCACATTTTCTCGTTCACTGGG 480 |||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||| Sbjct 1785 GAAAAGGCCAATAAGATTAAATCTGAGAACACACACATTCACATTTTTTCATTCACTGGG 1726 Query 481 GAAGAAATGGCCACAAAGGCCGACTACACTCTCGATGAAGAAAGCAGGGCTAGGATCAAA 540 || ||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||| Sbjct 1725 GAGGAAATGGCCACAAAGGCAGACTACACTCTCGACGAGGAAAGCAGGGCTAGGATTAAA 1666 Query 541 ACCAGGCTATTCACCATAAGACAAGAAATGGCCAGCAGAGGCCTCTGGGATTCCTTTCGT 600 |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1665 ACCAGGCTGTTTACCATAAGACAAGAAATGGCCAACAGAGGCCTCTGGGATTCCTTTCGT 1606 Query 601 CAGTCCGAGAGAGGAGAAGAGACAATTGAAGAAAGGTTTGAAATCACAGGAACAATGCGC 660 |||||||| ||||| ||||| ||||||||||||| ||||||||||||||||| |||||| Sbjct 1605 CAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAAATTTGAAATCACAGGAACTATGCGC 1546 Query 661 AAGCTTGCCGACCAAAGTCTCCCGCCGAACTTCTCCAGCCTTGAAAATTTTAGAGCCTAT 720 | ||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| Sbjct 1545 AGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCTGCCTTGAGAATTTTAGAGCCTAT 1486 Query 721 GTGGATGGATTCGAACCGAACGGCTACATTGAGGGCAAGCTGTCTCAAATGTCCAAAGAA 780 ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 1485 GTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAA 1426 Query 781 GTAAATGCTAGAATTGAACCTTTTTTGAAAACAACACCACGACCACTTAGACTTCCGAAT 840 || ||||| ||||||||||||| |||| ||||||||| ||||| | | |||||| ||| Sbjct 1425 GTGAATGCCCAAATTGAACCTTTTCTGAAGACAACACCAAGACCAATCAAACTTCCTAAT 1366 Query 841 GGGCCTCCCTGTTCTCAGCGGTCCAAATTCCTGCTGATGGATGCCTTAAAATTAAGCATT 900 || ||||| |||| |||||||||||||||||| ||||||||||| || ||||| |||||| Sbjct 1365 GGACCTCCTTGTTATCAGCGGTCCAAATTCCTCCTGATGGATGCTTTGAAATTGAGCATT 1306 Query 901 GAGGACCCAAGTCATGAAGGAGAGGGAATACCGCTATATGATGCAATCAAATGCATGAGA 960 || ||||||||||| |||||||| || || || |||||||||| ||||| ||||| | | Sbjct 1305 GAAGACCCAAGTCACGAAGGAGAAGGGATCCCATTATATGATGCGATCAAGTGCATAAAA 1246 Query 961 ACATTCTTTGGATGGAAGGAACCCAATGTTGTTAAACCACACGAAAAGGGAATAAATCCA 1020 ||||||||||||||||| ||||| || | || |||||||||||||||||||||||| || Sbjct 1245 ACATTCTTTGGATGGAAAGAACCTTATATAGTCAAACCACACGAAAAGGGAATAAATTCA 1186 Query 1021 AATTATCTTCTGTCATGGAAGCAAGTACTGGCAGAACTGCAGGACATTGAGAATGAGGAG 1080 ||||| || ||||||||||||||||||||| ||||| ||||||||||||| ||||||||| Sbjct 1185 AATTACCTGCTGTCATGGAAGCAAGTACTGTCAGAATTGCAGGACATTGAAAATGAGGAG 1126 Query 1081 AAAATTCCAAAGACTAAAAATATGaaaaaaaCAAGTCAGCTAAAGTGGGCACTTGGTGAG 1140 || ||||||| |||||||| ||||| ||||| ||||| || |||||||| |||||||| Sbjct 1125 AAGATTCCAAGAACTAAAAACATGAAGAAAACGAGTCAACTGAAGTGGGCTCTTGGTGAA 1066 Query 1141 AACATGGCACCAGAAAAGGTAGACTTTGACGACTGTAAAGATGTAGGTGATTTGAAGCAA 1200 |||||||||||||| |||||||||||||| |||| | ||| || | |||||||||||| Sbjct 1065 AACATGGCACCAGAGAAGGTAGACTTTGAAAACTGCAGAGACATAAGCGATTTGAAGCAA 1006 Query 1201 TATGATAGTGATGAACCAGAATTGAGGTCGCTTGCAAGTTGGATTCAGAATGAGTTCAAC 1260 ||||||||||| ||||| ||||| ||||| ||| |||| ||||| |||| |||||||||| Sbjct 1005 TATGATAGTGAAGAACCTGAATTAAGGTCACTTTCAAGCTGGATACAGAGTGAGTTCAAC 946 Query 1261 AAGGCATGCGAACTGACAGATTCAAGCTGGATAGAGCTTGATGAGATTGGAGAAGATGTG 1320 ||||| || || || || |||||| |||||||||||| ||||| |||||||| || || Sbjct 945 AAGGCCTGTGAGCTAACTGATTCAGTCTGGATAGAGCTCGATGAAATTGGAGAGGACGTA 886 Query 1321 GCTCCAATTGAACACATTGCAAGCATGAGAAGGAATTATTTCACATCAGAGGTGTCTCAC 1380 || |||||||| ||||||||||||||||||||||||||||||||| |||||||||| || Sbjct 885 GCCCCAATTGAGCACATTGCAAGCATGAGAAGGAATTATTTCACAGCAGAGGTGTCCCAT 826 Query 1381 TGCAGAGCCACAGAATACATAATGAAGGGGGTGTACATCAATACTGCCTTACTTAATGCA 1440 || ||||| || |||||||||||||||||||| ||||| || |||||| | || |||||| Sbjct 825 TGTAGAGCTACTGAATACATAATGAAGGGGGTATACATTAACACTGCCCTGCTCAATGCA 766 Query 1441 TCTTGTGCAGCAATGGATGATTTCCAATTAATTCCAATGATAAGCAAGTGTAGAACTAAG 1500 || |||||||||||||| ||||| ||| ||||||| |||||||||||||| |||||||| Sbjct 765 TCCTGTGCAGCAATGGACGATTTTCAACTAATTCCCATGATAAGCAAGTGCAGAACTAAA 706 Query 1501 GAGGGAAGGCGAAAGACCAACTTGTATGGTTTCATCATAAAAGGAAGATCCCACTTAAGG 1560 |||||||||||||| ||||| || ||||| ||||||||||| |||||||| || || ||| Sbjct 705 GAGGGAAGGCGAAAAACCAATTTATATGGATTCATCATAAAGGGAAGATCTCATTTGAGG 646 Query 1561 AATGACACCGACGTGGTAAACTTTGTGAGCATGGAGTTTTCTCTCACTGACCCAAGACTT 1620 |||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||| Sbjct 645 AATGACACAGACGTGGTAAATTTTGTGAGCATGGAGTTTTCTCTCACAGACCCGAGACTT 586 Query 1621 GAACCACACAAATGGGAGAAGTACTGTGTTCTTGAGATAGGAGATATGCTTCTAAGAAGT 1680 |||||||| ||||||||||| |||||||| |||||||||||||||||| | ||||||||| Sbjct 585 GAACCACATAAATGGGAGAAATACTGTGTCCTTGAGATAGGAGATATGTTACTAAGAAGT 526 Query 1681 GCCATAGGCCAGGTTTCAAGGCCCATGTTCTTGTATGTGAGGACAAATGGAACCTCAAAA 1740 ||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 525 GCCATAGGCCAAATTTCAAGGCCGATGTTCTTGTATGTGAGGACAAACGGAACATCAAAG 466 Query 1741 ATTAAAATGAAATGGGGAATGGAGATGAGGCGTTGTCTCCTCCAGTCACTTCAACAAATT 1800 | |||||||||||||||||||||||||| ||||| ||||| |||||||| || || || Sbjct 465 GTCAAAATGAAATGGGGAATGGAGATGAGACGTTGCCTCCTTCAGTCACTCCAGCAGATC 406 Query 1801 GAGAGTATGATTGAAGCTGAGTCCTCTGTCAAAGAGAAAGACATGACCAAAGAGTTCTTT 1860 ||||| ||||||||||| |||||||| || |||||||||||||||||||||||||| ||| Sbjct 405 GAGAGCATGATTGAAGCCGAGTCCTCAGTTAAAGAGAAAGACATGACCAAAGAGTTTTTT 346 Query 1861 GAGAACAAATCAGAAACATGGCCCATTGGAGAGTCTCCCAAAGGAGTGGAGGAAAGTTCC 1920 ||||| ||||||||| ||||||||||||| ||||| ||||| |||||||| ||| ||||| Sbjct 345 GAGAATAAATCAGAAGCATGGCCCATTGGGGAGTCCCCCAAGGGAGTGGAAGAAGGTTCC 286 Query 1921 ATTGGGAAGGTCTGCAGGACTTTATTAGCAAAGTCGGTATTTAACAGCTTGTATGCATCT 1980 |||||||| ||||| |||||| |||| || ||||| ||||| || ||| |||||||||| Sbjct 285 ATTGGGAAAGTCTGTAGGACTCTATTGGCTAAGTCAGTATTCAATAGCCTGTATGCATCA 226 Query 1981 CCACAACTAGAAGGATTTTCAGCTGAATCAAGAAAACTGCTTCTTATCGTTCAGGCTCTT 2040 |||||| | |||||||||||||| || |||||||||||||| ||| | |||||||||||| Sbjct 225 CCACAATTGGAAGGATTTTCAGCGGAGTCAAGAAAACTGCTCCTTGTTGTTCAGGCTCTT 166 Query 2041 AGGGACAATCTGGAACCTGGGACCTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAG 2100 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 AGGGACAACCTCGAACCTGGGACCTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAG 106 Query 2101 TGCCTAATTAATGATCCCTGGGTTTTGCTTAATGCTTCTTGGTTCAACTCCTTCCTTACA 2160 ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 105 TGCCTGATTAATGATCCCTGGGTTTTGCTCAATGCGTCTTGGTTCAACTCCTTCCTGACA 46 Query 2161 CATGCATTGAGTTAGTTGTGGCAGTGCTACTATTTGCTATCCATA 2205 |||||||| | ||||| |||||||||||||||||| ||||| || Sbjct 45 CATGCATTAAAATAGTTATGGCAGTGCTACTATTTGTTATCCGTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7019442699270