Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_002204.1 Length=2368 Score E Sequences producing significant alignments: (Bits) Value seq205407 370 2e-99 >seq205407 Length=1958 Score = 370 bits (410), Expect = 2e-99 Identities = 823/1215 (68%), Gaps = 56/1215 (5%) Strand=Plus/Plus Query 656 AACAAGAGTGGAATACATCAAAAGAGCATTATCATTAAACACAATGACTAAAGATGCTGA 715 || ||||| || ||| | | |||||| || |||| ||||| ||||| |||||||| || Sbjct 279 AATAAGAGAGGC-TACCTAATAAGAGCTTTGACATTGAACACGATGACCAAAGATGCAGA 337 Query 716 AAGAGGCAAACTAAAAAGAAGAGCAATTGCCACCGCTGGGATACAAATCAGAGGATTTGT 775 ||||||||| |||||||||| || ||||| || | ||||| ||||| ||||| || || Sbjct 338 GAGAGGCAAATTAAAAAGAAGGGCTATTGCAACACCCGGGATGCAAATTAGAGGGTTCGT 397 Query 776 ATTAGTAGTTGAAAACTTGGCTAAAAATATCTGTGAAAATCTAGAGCAAAGTGGTTTACC 835 | | ||||||| || |||| || || || ||||| || || ||| ||| | || Sbjct 398 GTACTTCGTTGAAACTTTAGCTAGAAGCATTTGCGAAAAGCTTGAACAATCTGGACTTCC 457 Query 836 CGTAGGTGGAAACGAAAAGAAGGCCAAACTATCAAATGCAGTGGCTAAAATGCTCAGTAA 895 || || || || ||||||||||||||||| |||||| ||| |||||| | | ||| Sbjct 458 GGTTGGGGGTAATGAAAAGAAGGCCAAACTGGCAAATGTTGTGAGAAAAATGATGACTAA 517 Query 896 TTGTCCACCAGG---AGGGATCAGTATGACTGTGACAGGAGACAATACTAAATGGAATGA 952 || ||| || || | | | | || | || || ||||| ||||| |||||||| Sbjct 518 TT---CACAAGACACAGAGCTTTCTTTCACAATCACTGGGGACAACACTAAGTGGAATGA 574 Query 953 ATGCTTAAATCCAAGAATCTTTTTGGCTATGACTGAAAGAATAACCA-GAGACAGCCCAA 1011 | ||| || |||| |||||||| |||| | | || || | || || || | Sbjct 575 AAATCAAAACCCCCGAATGTTTTTGGCGATGATTACATACATCACAAAGAATCAACCTGA 634 Query 1012 TTTGGTTCCGGGATTTTTGTAGTATAGCACCGGTCTTGTTCTCCAATAAAATAGCTAGAT 1071 | ||||| | | | || || ||||| | ||||||| || ||||| || ||| Sbjct 635 AT-GGTTCAGAAACATCCTGAGCATCGCACCAATAATGTTCTCAAACAAAATGGCAAGAC 693 Query 1072 TGGGAAAAGGGTTCATGATAACAAGTAAAACAAAAAGACTAAAAGCTCAAATACCTTGTC 1131 |||||||||| | |||| | ||||| | || | || | ||||||||| Sbjct 694 TGGGAAAAGGATACATGTTCGAGAGTAAGAGAATGAAGCTCCGGACACAAATACCTG--- 750 Query 1132 CCGATCTGTTTAATATACCATTA----GAAAGATAT-AATGAAGAAACAAGGGC-AAAAC 1185 | || || | | | |||| ||| || | |||||| ||||||| |||| Sbjct 751 CAGAAATGCT--AGCAAGCATTGACCTGAAGTATTTCAATGAATCAACAAGGAAGAAAAT 808 Query 1186 TGAAAAAGCTAAAACCTTTCTTC-AATGAAGAAGGAACGGCATCTCTTTCGCCAGGAATG 1244 ||| ||| ||| ||| |||| ||| ||| || || ||||| | || |||||| Sbjct 809 TGAGAAAA-TAAGGCCT--CTTCTAAT--AGATGGCACAGCATCATTGAGCCCTGGAATG 863 Query 1245 ATGATGGGAATGTTTAATATGCTATCTACAGTATTAGGAGTAGCCGCACTAG-----GGA 1299 |||||||| ||||| || |||||| |||||| |||||||| | ||| ||| Sbjct 864 ATGATGGGCATGTTCAACATGCTAAGTACAGTTTTAGGAGTCTCGATACTGAATCTTGGA 923 Query 1300 TAAAAAACATTGGAAACAAAGA----ATACTTATGGGATGGACTGCAGTCTTCGGATGAT 1355 |||| | || | || |||| ||||| |||||||| || || || || || ||| Sbjct 924 CAAAAGAAAT---ACACCAAGACAACATACTGGTGGGATGGGCTCCAATCCTCAGACGAT 980 Query 1356 TTTGCTCTGTTTGTTAATGCAAAAGATGAAGAG-----ACATGTATGGAAGGAATAAACG 1410 ||||| || | || |||||| | || | ||| ||| | | ||| | ||| | Sbjct 981 TTTGCCCTCATAGTGAATGCACCAAATCATGAGGGAATACAAGCA-GGAGTGGATAGA-- 1037 Query 1411 ATTTTTACCGAACATGTAAGCTATTGGGAATAAACATGAGCAAAAAGAAAAGTTACTGTA 1470 || ||| | || || ||| || ||||||| ||||||||||||||||| || | Sbjct 1038 --TTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAGAAGTCCTATATAA 1095 Query 1471 ATGAAACTGGGATGTTTGAATTTACCAGCATGTTTTACAGAGATGGATTTGTATCTAATT 1530 || |||| |||| |||||||| || ||| | ||||| || |||||||||| |||||| Sbjct 1096 ATAAAACAGGGACATTTGAATTCACTAGCTTTTTTTATCGATATGGATTTGTGGCTAATT 1155 Query 1531 TTGCAATGGAACTCCCTTCATTTGGAGTCGCTGGAGTGAATGAATCAGCAGACATGGCAA 1590 || ||||| || || |||||||| ||||| | || || ||||| |||||| | Sbjct 1156 TTAGCATGGAGCTGCCAAGTTTTGGAGTGTCTGGAATAAACGAGTCAGCTGACATGAGCA 1215 Query 1591 TAGGAATGACAATAATAAAGAACAATATGATCAACAATGGGATGGGCCCAGCAACGGCAC 1650 | ||| | ||| | ||||||||||| ||||| ||||||| | || |||||||| || | Sbjct 1216 TTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGACCAGCAACAGCCC 1275 Query 1651 AAACAGCCATACAATTATTCATAGCTGACTATAGATACACCTACAAATGCCACAGGGGAG 1710 ||| || | ||||| ||||| || || |||||||| || ||||| || |||| Sbjct 1276 AAATGGCTCTCCAATTGTTCATCAAAGATTACAGATACACATATCGGTGCCATAGAGGAG 1335 Query 1711 ATTCCAAAGTGGAAGGGAAGAGAATGAAAATT----ATAAAGGAGCTATGGGAAAACACT 1766 | | || | || | ||||| || ||| |||||| |||| ||||| | || Sbjct 1336 ACACACAAATCCAA---ACGAGAA-GATCATTCGAGATAAAGAAGCTGTGGGATCAAACC 1391 Query 1767 AAAGGAAGAGATGGTCTATTAGTAGCAGATGGTGGGCCTAATCTTTACAATTTGAGAAAC 1826 || ||| || ||||| ||| ||||||| || || || | |||||| | | || Sbjct 1392 CAATCAAGGACAGGACTATTGGTATCAGATGGGGGACCAAACTTATACAATATCCGGAAT 1451 Query 1827 CTGCATATTCCAGAA 1841 || || || || ||| Sbjct 1452 CTTCACATCCCTGAA 1466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7450377107820