Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_002645.1 Length=27317 Score E Sequences producing significant alignments: (Bits) Value seq96645 744 0.0 seq139329 562 5e-156 seq92323 131 3e-26 seq132367 89.7 9e-14 >seq96645 Length=1578 Score = 744 bits (824), Expect = 0.0 Identities = 1121/1582 (71%), Gaps = 16/1582 (1%) Strand=Plus/Minus Query 15253 TATGAGAAGTCTACAGTATTACAAGCTGCTGGTCTTTGTGTAGTATGTGGTTCTCAAACA 15312 ||||| |||||||| || || |||||||||||| | ||||| || |||||||| ||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15313 GTTCTAAGATGCGGTGATTGTTTACGCAGACCGATGTTGTGCACTAAGTGCGCCTATGAT 15372 ||| || | ||||| || |||||| | ||||| | | ||||| ||||||||||| || Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15373 CATGTGTTTGGCACTGATCATAAGTTCATTTTAGCTATTACACCATATGTGTGTAACACA 15432 ||||| | || || | || || |||||| | |||| ||||| |||||||||| | Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15433 TCTGGCTGCAATGTAAATGACGTTACAAAACTGTATCTTGGAGGTTTGAATTATTACTGT 15492 ||| || | ||| ||||| ||||||||| ||| | | |||||| | || ||||| ||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15493 GTAGACCACAAACCACATCTTTCATTCCCACTGTGTTCAGCTGGTAATGTCTTTGGTTTG 15552 || ||||||||||| | |||||||| || ||| | ||||||||| |||||| || Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15553 TACAAAAGTTCTGCTTTGGGTTCCATGGACATTGATGTCTTTAACAAACTTTCTACCTCT 15612 ||||| ||| ||| | ||||| || |||||| || ||||||||| || || Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 15613 GATTGGTCTGACATTCGCGACTACAAGCTTGCTAATGATGCAAAAGAGTCACTAAGGTTG 15672 || ||| | | | || || || ||||||||| | | ||||| || || | | Sbjct 1214 GACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATT 1155 Query 15673 TTTGCAGCTGAAACGGTCAAGGCTAAAGAGGAAAGTGTTAAGTCATCATACGCTTATGCT 15732 || || |||||||| || || || || |||||| |||||| | ||| |||||||| Sbjct 1154 TTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCC 1095 Query 15733 ACCCTAAAGGAGATTGTAGGTCCTAAGGAACTTTTGCTCTTATGGGAAAGTGGAAAAGCC 15792 | |||||||| |||| || ||||||||| || | ||| ||||||| || Sbjct 1094 ATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAGATT 1035 Query 15793 AAACCACCGTTAAACCGTAATTCTGTTTTTACATGCTTCCAAATTACAAAAGACTCCAAG 15852 ||||| || | ||| | ||||||||||| ||||| || || || | || || | || Sbjct 1034 AAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAAA 975 Query 15853 TTTCAAGTTGGTGAGTTTGTGTTTGAGAAAGTAGATTACGGTTCTGATACGGTTACTTAC 15912 |||| | ||||| |||||||||||| | ||| || ||| |||| | ||| || Sbjct 974 ATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTAT 915 Query 15913 AAATCCACTGCTACTACTAAGTTAGTACCAGGTATGTTGTTTATTTTGACTTCTCATAAT 15972 ||| ||| ||||||||| | | ||| |||||| | ||| | ||||| ||||||||| Sbjct 914 AAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCATAAT 855 Query 15973 GTTGCTCCACTTAGAGCGCCAACA--ATGGCAAACCAGGAGAAATATTCTACCATTTACA 16030 || |||||||| | || |||| | | ||||| ||||| || |||||| | || Sbjct 854 GTGAGTCCACTTAAA--GCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCA 797 Query 16031 AGTTGCACCCATCATTTAATGTTAGTGATGCTTATGCAAATCTTGTACCTTATTACCAAC 16090 || | | || | ||||| | || || ||| | | | || ||||| || ||| Sbjct 796 AGCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTATCAAA 737 Query 16091 TTATTGGCAAACAGCGTATAACCACAATACAGGGTCCTCCTGGTAGTGGAAAATCGCATT 16150 | || || || || | || || || || ||||||||||||||||| ||||| |||| Sbjct 736 TGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATT 677 Query 16151 GTTCTATTGGTATTGGTGTGTATTACCCTGGAGCGAGGATCGTGTTCACCGCTTGTTCTC 16210 || ||| ||| | ||| ||||||| ||| ||| || || || | ||| || ||||| | Sbjct 676 GTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTCAC 617 Query 16211 ACGCTGCTGTTGATTCGCTCTGTGCAAAAGCTGTCACAGCCTATAGTGTTGATAAGTGTA 16270 | || ||||| ||| | | |||| ||||||| || || || ||||||||| ||| Sbjct 616 ATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTT 557 Query 16271 CACGTATTATTCCTGCACGTGCCAGAGTTGAGTGTTATAGTGGTTTTAAACCTAACAATA 16330 || | || || ||| | | ||||||||| ||||||| |||||||||||||| |||| Sbjct 556 CAAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAATAATA 497 Query 16331 ATAGTGCACAATACGTGTTTAGTACTGTTAATGCGTTACCTGAAGTTAATGCAGACATTG 16390 | ||||||||| ||||| | || |||||||| || ||||||| ||| ||||||| Sbjct 496 CCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGTGACATTG 437 Query 16391 TTGTCGTGGATGAGGTGTCTATGTGCACTAACTATGACTTGTCTGTGATTAACCAGCGTA 16450 | || |||||||| ||||| ||||| || |||||||| | || ||| ||| | ||| Sbjct 436 TGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGA--TCTCAGTG-TTATAAATAGTA 380 Query 16451 TA-TCA--TATAAACACATTGTATATGTTGGTGATCCTCAACAGCTTCCAGCTCCTAGAG 16507 | | | || ||||| ||||| ||||| ||||| || ||||| |||||||| |||||| Sbjct 379 GACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAA 320 Query 16508 TTCTTATCTCTAAAGGTGTTATGGAACCAATTGACTATAATGTTGTGACACAACGTATGT 16567 | || ||| ||| | | || ||||| ||||||||||| || | |||| Sbjct 319 CCTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGT 260 Query 16568 GTGCTATAGGACCCGATGTCTTTTTACACAAGTGTTACAGATGTCCTGCTGAAATAGTTA 16627 || ||||||| ||||| ||||| ||||| ||||||||||| || |||||||| |||| Sbjct 259 GTAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTA 200 Query 16628 ACACTGTTTCAGAGCTTGTTTATGAAAACAAGTTTGTACCTGTCAAAGAAGCTAGT--AA 16685 | || || || | ||||||||||| || || ||| |||||||||| | ||| || Sbjct 199 AAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTG--AGTCAAA 142 Query 16686 GCAGTGCTTCAAAATCTTTGAACGCGGTAGTGTTCAGGTAGACAATGGCTCCAGTATAAA 16745 ||||||||| || || |||| | || |||||| | || | ||| |||||| Sbjct 141 GCAGTGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCTATAAA 82 Query 16746 TAGGCGTCAACTTGATGTTGTTAAGCGATTTATA-CATAAAAACTCCACATGGAGCAAGG 16804 | ||||| || ||||| ||| |||| || || | || | | | |||| | || | Sbjct 81 CAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATC-CAAGATGGCGTAAAG 23 Query 16805 CTGTGTTTATCTCACCTTACAA 16826 |||| || |||||||| || || Sbjct 22 CTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 562 bits (622), Expect = 5e-156 Identities = 771/1076 (72%), Gaps = 6/1076 (1%) Strand=Plus/Minus Query 14257 AAGTTTTATGGCGGGTGGGATAATATGTTAAAGAACCTGATGGCCGATGTTGATGATCCT 14316 || || ||||| || ||||| |||||| |||||||| ||||| |||||| ||| || | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 14317 AAATTGATGGGATGGGACTATCCTAAGTGTGATAGAGCTATGCCCTCAATGATTCGTATG 14376 |||||||||||||||||||| ||||| || | ||| |||| ||||| || ||| Sbjct 1014 TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAATG 955 Query 14377 TTGTCGGCTATGATCTTAGGTTCTAAGCATGTCACATGTTGTACGGCTAGTGATAAATTT 14436 || || ||| | || ||||||||||| | |||||||| |||||||| || Sbjct 954 GCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTTC 895 Query 14437 TATAGACTTAGTAATGAGCTTGCTCAAGTTTTGACCGAGGTTGTTTATTCAAATGGTGGG 14496 ||| |||| ||||||| | |||||||| | || |||||||| ||| | ||||| Sbjct 894 TATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGGC 835 Query 14497 TTTTATTTTAAACCTGGTGGTACAACTTCTGGTGATGCAACTACAGCCTACGCCAATTCT 14556 |||||| | |||||||||||||||||| |||||| | |||||||| || || || || Sbjct 834 TTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTCA 775 Query 14557 GTCTTTAATATATTTCAGGCTGTAAGTTCTAACATTAATTGCGTTTTGAGCGTTAACTCG 14616 | ||||| || ||||| ||||| | |||| |||| | || | ||| | || Sbjct 774 GCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGATTCA 715 Query 14617 TCAAATTGCAATAATTTTAATGTTAAGAAGTTACAGAGACAACTTTATGATAATTGCTAT 14676 | || || ||| ||| |||||| ||||| | | | ||||| ||||| || Sbjct 714 AACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTTAC 655 Query 14677 AGAAATAGTAATGTTGATGAATCTTTTGTGGATGACTTTTATGGTTATTTGCAAAAGCAT 14736 | | ||| | ||| ||||| ||||| | || | || | ||||||| |||||| Sbjct 654 CGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAGCAC 595 Query 14737 TTTTCTATGATGATTCTTTCTGATGATAGTGTTGTGTGCTATAATAAAACTTATGCTGGA 14796 || |||||||||||| | ||||||||| |||| || || || || ||| |||||||| Sbjct 594 TTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCTGAT 535 Query 14797 CTTGGTTACATTGCTGATATTAGTGCTTTTAAAGCCACTTTGTATTATCAGAATGGTGTG 14856 |||||||| | || || ||| |||||||||| |||||| | ||||||||||| |||| Sbjct 534 CTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAATGTG 475 Query 14857 TTTATGAGTACAGCTAAGTGTTGGACTGAGGAAGATCTTTCTATAGGACCTCATGAATTT 14916 |||||| |||||||||||||||| || ||||||| | | ||||| || |||||| Sbjct 474 TTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAATTT 415 Query 14917 TGCTCACAGCACACTATGCAGATTGTAGATGAAAATGGTAAGTATTATCTACCATATCCA 14976 || ||||| ||||| | || ||||||| | ||||| | |||||| |||| |||||| Sbjct 414 TGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTTATCCA 355 Query 14977 GATCCTAGCCGTATTATTTCTGCTGGTGTTTTTGTGGATGACATCACTAAGACTGAT--- 15033 || || | ||| | || || ||||||||||| |||||||| |||||| || Sbjct 354 GACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGACAAC 295 Query 15034 GCTGTCATTCTTTTGGAACGCTATGTTTCTCTGGCTATAGATGCCTACCCATTGTCTAAG 15093 | | |||| ||| ||||| ||||| || || || || ||||| || ||| | | || Sbjct 294 GTTATCATGCTT---GAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAA 238 Query 15094 CATCCTAAACCTGAGTACAGGAAGGTGTTTTACGCATTGTTAGACTGGGTCAAACATCTC 15153 || |||||||||| ||| || || || || |||||| | |||||||| ||||| || Sbjct 237 CACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACCTA 178 Query 15154 AACAAGACTCTTAACGAAGGTGTTTTGGAGTCTTTTTCTGTTACACTTTTAGATGAACAT 15213 | |||||||| || | ||| | | || || || ||||| || | ||||| || | Sbjct 177 CAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATGGT 118 Query 15214 GAGTCTAAGTTTTGGGATGAAAGCTTTTATGCTAGTATGTATGAGAAGTCTACAGTATTA 15273 | ||| |||||| ||| || || || ||| | || ||||||||||| || || Sbjct 117 CAAGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTTTG 58 Query 15274 CAAGCTGCTGGTCTTTGTGTAGTATGTGGTTCTCAAACAGTTCTAAGATGCGGTGA 15329 ||||||||||| | ||||| || |||||||| ||||| || || | ||||| || Sbjct 57 CAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAGA 2 >seq92323 Length=1240 Score = 131 bits (144), Expect = 3e-26 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 23219 GGTAGATTGGCTGCTTTGAATGTATTCGTTTCTCATACATTGACTAAGTACACTGAAGTT 23278 |||||||| || || | |||| | || ||||| || || ||| |||| ||||||| Sbjct 1240 GGTAGATTAGCGGCACTTAATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTC 1181 Query 23279 CGTGCTTCCAGACAGCTTGCACAACAAAAAGTGAATGAGTGTGTCAAATCCCAGTCTAAG 23338 ||| || || |||||| ||||||| ||||||||||| ||||| ||||| | Sbjct 1180 AAGGCTAGTAGGCAACTTGCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGAT 1121 Query 23339 CGTTATGGCTTCTGTGGAAATGGCACTCACATTTTCTCAATTGTTAATGCTGCTCCTGAG 23398 | ||||| |||||||||||||| || ||| | |||||| |||| ||| |||| ||||| Sbjct 1120 AGGTATGGGTTCTGTGGAAATGGAACACACCTATTCTCACTTGTCAATTCTGCACCTGAT 1061 Query 23399 GGGCTTGTTTTTCTCCACACTGTCTTGTTGCCGACACAAT 23438 || || |||| | ||||| || ||| | || ||| ||| Sbjct 1060 GGTCTACTTTTCTTTCACACAGTTTTGCTTCCTACAGAAT 1021 >seq132367 Length=1893 Score = 89.7 bits (98), Expect = 9e-14 Identities = 173/253 (68%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 23246 GTTTCTCATACATTGACTAAGTACACTGAAGTTCGTGCTTCCAGACAGCTTGCACAACAA 23305 || || || || ||||| |||| ||||||| ||| || || || ||| || Sbjct 9 GTGTCGCAAACTTTGACCCAGTATGCTGAAGTCAAGGCTAGTAGGCAACTGGCAATGGAA 68 Query 23306 AAAGTGAATGAGTGTGTCAAATCCCAGTCTAAGCGTTATGGCTTCTGTGGAAATGGCACT 23365 ||||| ||||| || || ||||| || || | | ||||| || ||||||||||| || Sbjct 69 AAAGTTAATGAATGCGTGAAATCACAATCGGATAGGTATGGTTTTTGTGGAAATGGAACA 128 Query 23366 CACATTTTCTCAATTGTTAATGCTGCTCCTGAGGGGCTTGTTTTTC-TCCACACTGTCTT 23424 ||| | |||||| |||| ||| |||| ||||| || ||| | ||| | ||||| || | Sbjct 129 CACCTGTTCTCACTTGTCAATTCTGCACCTGA-TGGTTTGCTCTTCTTTCACACAGTTCT 187 Query 23425 GTTGCCGACACAATATAAGGATGTTGAAGCGTGGTCTGGGTTGTGCGTTGATGGTACAAA 23484 | | || || ||| | || || || ||||| || | || ||| ||| ||| | Sbjct 188 GCTTCCTACCGAATGGGAAGAAGTGACTGCATGGTCAGGTATATGTGTTAATGATACCTA 247 Query 23485 CGGTTATGTGTTG 23497 | ||||||||| Sbjct 248 TGCATATGTGTTG 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 87061672029200