Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_003045.1 Length=31028 Score E Sequences producing significant alignments: (Bits) Value seq139329 172 1e-38 seq96645 109 1e-19 >seq139329 Length=1076 Score = 172 bits (190), Expect = 1e-38 Identities = 560/855 (65%), Gaps = 46/855 (5%) Strand=Plus/Minus Query 15079 CTAAATTTTATGGCGGCTGGGATGATATGTTACGTCGCCTTATTAAAGATGTTGATAATC 15138 ||||||| ||||| |||||||| ||||| || | | || ||||| |||||| Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATG 1017 Query 15139 CTGTACTTATGGGTTGGGATTATCCTAAGTGTGATCGTGCTATGCCAAACATACTACGTA 15198 | | ||||| ||||| ||||| ||||| || |||||| |||| || || |||| | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 15199 TTGTTAGTAGTCTGGTTTTGGCTCGAAAACATGAGGCATGTTGTTCGCAAAGCGATAGGT 15258 | | | | |||| |||| | || || | |||||| | || || ||||||| Sbjct 956 TGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGT 897 Query 15259 TTTATCGACTTGCGAATGAATGCGCACAAGTTCTGAGTGAAATTGTTATGTGT---GGTG 15315 | |||||||| | ||||| | || ||||| || | || |||| ||| |||| Sbjct 896 TCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTG 837 Query 15316 GCTGTTATTATGTTAAGCCTGGTGGCACTAGTAGTGGTGATGCAACTACTGCTTTTGCTA 15375 ||| |||| | || |||||||| || | ||||||||| | ||||| || | ||||| Sbjct 836 GCTTTTATA---TAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTA 780 Query 15376 ATTCAGTTTTTAACATATGTCAAGCTGTTTCAGCCAATGT--ATGTGCTTTAATG----- 15428 | |||| ||||||||| | |||||||||||| || ||||| | ||| | | | Sbjct 779 ACTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTG 720 Query 15429 --TCATGCAATGGTAATAAGATTGAAGATTTGAGTATACGTGCTCTTCAGAAGCGCTTAT 15486 ||| || |||| || || || | | |||| || | ||| ||| Sbjct 719 ATTCAAACACCTGTAACAATGTTACAGTTAAGGCCATAC-AGCGC-----AAG---ATAT 669 Query 15487 ACTCACA--TGT----GTA-TAGAAGTGATATGGTTGATTCAACCTTTGTCACAGAATAT 15539 | | ||| ||| ||| ||| |||| ||| ||| | | |||||| |||||| Sbjct 668 A-TGACAATTGTTACCGTAGTAGCAGTG---TGGATGA--CGA-CTTTGTAGTCGAATAT 616 Query 15540 TATGAATTTTTAAATAAGCATTTTAGTATGATGATTTTGAGTGATGATGGCGTTGTGTGT 15599 | | | ||||| ||||| || ||||||||||||| ||||||||| || || ||| Sbjct 615 TTTAGTTATTTAAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGT 556 Query 15600 TATAATTCTGACTATGCGTCCAAAGGGTATATTGCTAATATAAGTGCCTTTCAACAGGTA 15659 || || || ||||| || ||| | || | || |||| ||| | Sbjct 555 TACAACAAAGATTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACT 496 Query 15660 TTGTATTATCAAAATAACGTTTTTATGTCAGAATCCAAATGTTGGGTTGAAAATGACATA 15719 | |||||||| || || || |||||||| | | || |||||||| ||| || | Sbjct 495 CTATATTATCAGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTT 436 Query 15720 AATAATGGACCTCATGAATTCTGTTCACAACACACAATGC---TTGTAAAGATGGATGGG 15776 ||| ||||| || ||||| ||||||||||||||| | | ||||| ||||| Sbjct 435 AATGTGGGACCACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGT 376 Query 15777 GACGATGTCTATCTTCCATATCCTGATCCTAGTCGTATATTAGGAGCTGGATGTTTTGTA 15836 ||| || ||| | || ||||| || || | | || || ||| || |||||| Sbjct 375 GACTAT---TATTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTT 319 Query 15837 GATGA-TTTGTTAAAGACTGATAGTGTTCTTTTAATAGAACGATTTGTAAGTCTTGCAAT 15895 ||||| ||||| ||||| || | ||| | | | ||||| | ||| || ||||| Sbjct 318 GATGACATTGTT-AAGACAGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAAT 260 Query 15896 AGATGCTTATCCACT 15910 ||||| |||||||| Sbjct 259 TGATGCATATCCACT 245 >seq96645 Length=1578 Score = 109 bits (120), Expect = 1e-19 Identities = 359/547 (66%), Gaps = 16/547 (3%) Strand=Plus/Minus Query 16938 CAAGGACCTCCTGGTACAGGAAAGTCACATCTTGCTATTGGTCTTGCTGTTTATTATTGT 16997 ||||| |||||||||| || || |||||| || ||| ||| | | | | |||||| | Sbjct 707 CAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTTATAGGTTTGGGTTTGTATTATCCT 648 Query 16998 ACAGCACGTGTAGTATACACTGC--GGCCAGCCATGCAGCTGTTGACGCATTGTGTGAAA 17055 ||| | | || ||||| || | || ||||||||||| || || || ||||||| Sbjct 647 CAAGCTAGAATTGTTTACACAGCATGTTCA--CATGCAGCTGTGGATGCTTTATGTGAAA 590 Query 17056 AAGCATACAAATTTTTGAATATAAATGACTGCACTCGTATTGTTCCTGCCAAGG-TCAGG 17114 |||| | ||| || ||| | || | || | | || | ||| | ||| |||| Sbjct 589 AAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACCT-CAAAGAATCAGA 531 Query 17115 GTGGAGTGCTATGATAAGTTTAAAAT-TAATGACACCACTCGTAAGTATGTGTTTACTAC 17173 || || || ||| || |||| ||| |||| | |||| | | ||| ||||| || Sbjct 530 GTTGATTGTTAT-ATGGGTTTTAAACCTAATAATACCAATGCACAATATTTGTTTTGCAC 472 Query 17174 TATAAATGCATTACCTGAGATGGTGACTG--ATATTGTTGTTGTAGATGAAGTTAGTATG 17231 | ||||| || ||||| | | |||| | ||||| ||||| |||||||| ||| Sbjct 471 AGTTAATGCTTTGCCTGAA--GCTAACTGTGACATTGTGGTTGTGGATGAAGTGTCAATG 414 Query 17232 CTTACCAATTATGAGCTTTCTGTTATTAATGCTCGTATTCGTGCTA--AGCATTATGTTT 17289 ||| || ||||| || |||||| ||| | | | | |||| | ||| ||||| Sbjct 413 TGTACAAACTATGATCTCAGTGTTATAAATAGTAGACT--GAGCTACAAACATATTGTTT 356 Query 17290 ACATTGGTGATCCTGCTCAATTGCCAGCACCACGTGTGTTATTGAGCAAGGGTACACTTG 17349 | | ||||| || ||| | |||||||| | || | | ||||||||||| Sbjct 355 ATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTAATAAGGGTACACTCC 296 Query 17350 AACCTAAATATTTTAACACTGTTACTAAGCTTATGTGTTGCTTAGGGCCAGACATTTTTC 17409 | ||| | | | || ||| ||| || |||||| |||| || || | ||| Sbjct 295 AGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTAAACTAGGACCTGATGTATTTT 236 Query 17410 TTGGTACATGTTATAGATGTCCTAAGGAAATTGTTGATACAGTGTCTGCCTTGGTTTATG 17469 | | |||||| ||||| || ||||||||| | ||||| ||||| | ||||||| Sbjct 235 TGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAGTCTCTGCTCTTGTTTATG 176 Query 17470 AAAATAA 17476 | ||||| Sbjct 175 AGAATAA 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98894609628900