Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_003436.1 Length=28033 Score E Sequences producing significant alignments: (Bits) Value seq96645 628 4e-176 seq139329 470 3e-128 seq92323 104 4e-18 seq132367 86.0 1e-12 >seq96645 Length=1578 Score = 628 bits (696), Expect = 4e-176 Identities = 1099/1586 (69%), Gaps = 24/1586 (2%) Strand=Plus/Minus Query 15353 TATGAGAAATCTGCAGTTTTACAATCTGCAGGGCTTTGTGTTGTTTGTGGCTCTCAAACT 15412 ||||| || ||| | || || ||| |||| || | |||||||||||||| || |||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15413 GTTTTACGTTGTGGTGATTGTCTACGGCGTCCTATGCTTTGTACTAAGTGTGCTTATGAT 15472 ||||||||||| || || ||| || | | ||| | || || || ||||| || || || Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15473 CATGTCATTGGAACAACTCACAAGTTCATTTTGGCCATCACTCCATATGTGTGTTGTGCT 15532 |||||||| || |||| ||||| |||||| || | ||||| || ||||||||| | | Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTAGCTAT 1395 Query 15533 TCAGATTGTGGTGTCAATGATGTAACCAAGCTCTACTTAGGTGGTCTTAGTTACTGGTGT 15592 | |||| ||| |||||||| || || | | || || ||||||| || | ||| Sbjct 1394 AATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGT 1335 Query 15593 CATGAACACAAGCCACGTCTTGCATTCCCGTTGTGCTCTGCTGGTAATGTTTTTGGCTTA 15652 ||| ||||| |||| | |||||||| | || || ||||||||| ||||| | Sbjct 1334 ACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTG 1275 Query 15653 TACAAAAATTCTGCTACCGGTTCACCCGATGTTGAAGACTTTAATCGCATTGCTACATCC 15712 ||||| | | ||| | ||||| |||||||| || || || ||||| || Sbjct 1274 TACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCA 1215 Query 15713 GATTGGACTGATGTTTCTGACTACAGGTTGGCAAATGATGTCAAGGACTCATTGCGTCTA 15772 || ||||| |||| || || | | || ||| | || || || || || | Sbjct 1214 GACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATT 1155 Query 15773 TTTGCAGCGGAAACTATCAAGGCCAAGGAGGAGAGCGTTAAGTCATCCTATGCTTGTGCA 15832 || || || |||||| | || || |||||||| ||||| | ||||||| ||| Sbjct 1154 TTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATGCC 1095 Query 15833 ACACTACATGAGGTTGTAGGACCTAAAGA-GTTGTTGCTCAAATGGGAAGTCGGC--AGA 15889 | | || | |||||||| |||||||| || ||||| ||| |||||||| || | ||| Sbjct 1094 ATATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTA-CTCCAATGGGAA-TCCTCTAAGA 1037 Query 15890 CCCAAACCACCTCTTAATAGAAATTCGGTTTTCACTTGTTATCATATAACGAAGAACACC 15949 ||||| || ||||| |||||||| |||||||| |||| ||| |||| ||| | || Sbjct 1036 TT-AAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACT 978 Query 15950 AAATTTCAAATCGGTGAGTTTGTGTTTGAGAAGGCAGAATATGATAATGACGCTGTAACA 16009 ||| |||| | ||||| |||||||||||| || ||||||||| || ||| |||| Sbjct 977 AAAATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTAC 918 Query 16010 TATAAAACTACCGCCACAACAAAACTTGTTCCTGGCATGGTTTTTGTGCTTACCTCACAT 16069 ||||||| ||| ||| || || || | || || ||| |||||||| | || || ||| Sbjct 917 TATAAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCAT 858 Query 16070 AATGTTCAGCCATTGCGTGCACCAACCATT---GCTAATCAAGA-ACGTT--ATTCCACT 16123 ||||| ||| | | | | | |||| | || ||||| | || || ||| | Sbjct 857 AATGTGAGTCCACT---TAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCA-T 802 Query 16124 ATACATAAGTTGCATCCTGCTTTTAACATACCTGAAGCTTATTCTAGCTTAGTGCCCTAT 16183 || || || | ||||| | ||||||||| | ||||| ||| | | || ||||| || Sbjct 801 ATCCA--AGCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTAC 744 Query 16184 TACCAATTGATTGGTAAGCAGAAGATTACAACTATCCAGGGACCCCCCGGTAGTGGTAAA 16243 || ||| |||| |||||||| || ||||||||||||| || || || |||||||||||| Sbjct 743 TATCAAATGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAA 684 Query 16244 TCTCACTGTGTTATAGGGCTAGGTTTGTACTATCCAGGTGCACGTATTGTGTTTACAGCT 16303 || || ||||||||||| | |||||||| ||||| || | ||||| | ||||| Sbjct 683 TCACATTGTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCA 624 Query 16304 TGTTCTCATGCAGCGGTCGATTCACTCTGTGTGAAGGCCTCCACTGCTTATAGCAATGAC 16363 ||||| |||||||| || ||| | | |||| || || |||| | || ||| Sbjct 623 TGTTCACATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGAT 564 Query 16364 AAATGTTCACGCATCATACCACAGCGTGCTCGTGTTGAGTGTTATGATGGTTTCAAGTCT 16423 ||||||||| | || ||||| || | | ||||| |||||| ||||| || || Sbjct 563 AAATGTTCAAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCT 504 Query 16424 AATAATACTAGTGCTCAGTACCTTTTCTCCACTGTCAATGCTTTGCCAGAGTGTAATGCG 16483 |||||||| | ||| || || | || | ||| || ||||||||||| || ||| Sbjct 503 AATAATACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTGT 444 Query 16484 GACATTGTTGTGGTGGATGAAGTTTCTATGTGCACTAATTATGACTTGTCTGTCATAAAT 16543 |||||||| || ||||||||||| || ||||| || || ||||| | ||| |||||| Sbjct 443 GACATTGTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAAT 384 Query 16544 CAGCGCATCAGCTATAGGCATGTAGTCTATGTTGGTGACCCTCAACAGCTGCCTGCACCA 16603 | | ||||| | ||| | || ||||| |||||||| ||||| || || ||||| Sbjct 383 AGTAGACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCT 324 Query 16604 CGTGTTATGATTTCACGTGGTACTTTGGAACCAAAGGACTACAATGTTGTCACTCAACGT 16663 | ||||| ||||| | | || |||||||||||||||| ||||| | Sbjct 323 AGAACCTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGG 264 Query 16664 ATGTGTGCCCTTAAGCCTGATGTCTTCTTGCACAAGTGTTATCGCTGTCCTGCAGAGATA 16723 |||||| || |||||||| || |||||||| ||||| | || || || || || Sbjct 263 ATGTGTAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAATT 204 Query 16724 GTGCGCACTGTGTCTGAGATGGTCTATGAAAACCAATTCATTCCTGTGCACCCTGACAGC 16783 || || || |||| | || ||||| || |||| | ||||| ||||||| Sbjct 203 GTTAAAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTCA 144 Query 16784 AAGCAGTGTTTTAAGATCTTTTGCAAGGGTAATGTGCAGGTTGA---TAACGGTTCAAGT 16840 |||||||| |||||||| ||| || || | || ||| |||| |||| ||| | Sbjct 143 AAGCAGTGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTC---T 87 Query 16841 ATTAACCGCAGGCAATTGGATGTTGTGCGTATGTTTTTGGCTAAAAATCCTAGGTGGTCA 16900 || ||| || |||| | || ||||| ||||| || | ||||| || ||| Sbjct 86 ATAAACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGT 27 Query 16901 AAGGCTGTTTTCATTTCCCCTTATAA 16926 || ||||||||||| || || ||||| Sbjct 26 AAAGCTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 470 bits (520), Expect = 3e-128 Identities = 754/1079 (70%), Gaps = 8/1079 (1%) Strand=Plus/Minus Query 14355 CTAAGTTTTATGGTGGTTGGGACAATATGCTTAAGAACCTTATTGATGGTGTTGAAAATC 14414 |||| || |||||||| |||||||||||||| |||||| | || | ||| || ||| Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATG 1017 Query 14415 CGTGTCTTATGGGTTGGGATTACCCAAAGTGCGATAGAGCACTGCCCAATATGATACGCA 14474 ||| | ||||| ||||| || ||||||||||| | || |||| ||||||||||| | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 14475 TGATTTCAGCCATGATCTTAGGCTCTAAGCACACCACATGCTGCAGTTCTACTGACCGCT 14534 || ||| |||||| | || || |||||||||| || || | || ||| | | Sbjct 956 TGGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGT 897 Query 14535 TTTTCAGGTTGTGCAATGAATTGGCTCAAGTCCTTACTGAGGTTGTTTATTCTAATGGAG 14594 | | | | | ||||| || |||||||| || || |||||||| ||| || || | Sbjct 896 TCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTG 837 Query 14595 GGTTTTATTTGAAGCCAGGTGGTACTACCTCTGGTGATGCAACCACCGCATATGCAAACT 14654 | |||||| | || || |||||||| || |||||| | || || || ||||| |||| Sbjct 836 GCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACT 777 Query 14655 CAGTTTTCAATATCTTCCAAGCAGTAAGTGCCAATGTTAACAAACTTCTTAGT-GTTGAC 14713 ||| ||| || ||||| ||||| || ||| ||||||||||| || ||||| ||||| Sbjct 776 CAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCT-CTTAGGAGTTGAT 718 Query 14714 AGCAATGTCTGTCATAACTTAGAAGTTAAGCAATTACAACGTAAGCTCTATGAGTGCTGT 14773 || |||| | || | ||||||| |||| || ||| | ||||| ||| Sbjct 717 TCAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGT 658 Query 14774 TATAGATCGACTATCGTCGATGACCAGTTCGTCGTTGAGTATTATGGTTACTTGCGTAAA 14833 || | | | || |||||| | || || || || |||| | |||| || | || Sbjct 657 TACCGTAGTAGCAGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAAAG 598 Query 14834 CATTTTTCAATGATGATTCTTTCTGATGATGGCGTTGTTTGTTATAACAATGACTATGCA 14893 || || || ||||||||| | ||||||||||| || |||||||| ||||| || ||||| Sbjct 597 CACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATGCT 538 Query 14894 TCACTTGGTTATGTCGCGGATCTTAACGCATTCAAGGCTGTTTTGTATTACCAGAACAAC 14953 ||||||||||| || || || || || ||||| | | ||||| |||||||| Sbjct 537 GATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACAAT 478 Query 14954 GTCTTCATGAGCGCCTCTAAATGTTGGATCGAGCCTGACATTAATAAAGGTCCTCATGAA 15013 || || ||| | |||| |||||| | || || || ||||| || || || ||| Sbjct 477 GTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACGAA 418 Query 15014 TTTTGTTCGCAGCATACTATGCAGATTGTCGATAAGGAGGGTACTTATTACCTTCCTTAC 15073 |||||||| || || || | || ||||| | || ||| ||||| | ||||| Sbjct 417 TTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTTAT 358 Query 15074 CCTGATCCTTCAAGAATCCTCTCTGCAGGTGTGTTTGTTGATGACGTTGTTAAAACTGAT 15133 || || || || ||||| | || |||||||| |||||||||||| ||||||| || || Sbjct 357 CCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAGAC 298 Query 15134 GCAGTTGTATTGCTTGAACGTTATGTGTCATTGGCTATAGATGCCTACCCGTTATCTAAG 15193 ||| | ||||||||||||||||||| | || || ||||| || || | | || Sbjct 297 AACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAAAA 238 Query 15194 CATGAAAACCCTGAATATAAGAAGGTGTTTTATG---TGCTTTTGGATTGGGTTAAGCAT 15250 || || |||| ||| | || || || |||| ||||| || |||||||| || Sbjct 237 CACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTT---GACTGGGTTAAACAC 181 Query 15251 CTGTATAAAACTTTGAATGCTGGTGTGTTAGAGTCTTTTTCTGTCACACTTTTGGAAGAT 15310 || | || ||| | ||||||||| | | || || || |||||||| | || || ||| Sbjct 180 CTACAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGAT 121 Query 15311 TCTACTGCTAAATTCTGGGATGAGAGCTTTTATGCCAACATGTATGAGAAATCTGCAGTT 15370 | | |||||| ||| |||| || || |||| | || ||||| ||| | ||| Sbjct 120 GGTCAAGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTT 61 Query 15371 TTACAATCTGCAGGGCTTTGTGTTGTTTGTGGCTCTCAAACTGTTTTACGTTGTGGTGA 15429 || ||| |||| || | |||||||||||||| || |||||||| |||||||| || || Sbjct 60 TTGCAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAGA 2 >seq92323 Length=1240 Score = 104 bits (114), Expect = 4e-18 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 23893 GGCAGATTATCAGCACTTAATGCTTTTGTTGCCCAAACCCTCACTAAGTATACTGAGGTT 23952 || |||||| | ||||||||||||| ||| | |||||| | ||| ||||| |||| || Sbjct 1240 GGTAGATTAGCGGCACTTAATGCTTATGTGTCTCAAACCTTAACTCAGTATGCTGAAGTC 1181 Query 23953 CAGGCTAGCAGGAAGCTAGCACAGCAAAAGGTTAATGAGTGCGTCAAATCGCAATCTCAG 24012 ||||||| ||| | || ||| | |||| ||||||||||| || ||||| || || | Sbjct 1180 AAGGCTAGTAGGCAACTTGCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGAT 1121 Query 24013 CGTTACGGTTTTTGTGGTGGTGATGGCGAGCACATTTTCTCTCTGGTACAGGCCGCACCT 24072 | || || || | |||| |||| ||| | ||||| || || | | |||||| Sbjct 1120 AGGTATGGGTTCT---GTGGAAATGGAACACACCTATTCTCACTTGTCAATTCTGCACCT 1064 Query 24073 CAGGGCCTGCTGTTCTTACATACAGT 24098 | || || || ||||| || ||||| Sbjct 1063 GATGGTCTACTTTTCTTTCACACAGT 1038 >seq132367 Length=1893 Score = 86.0 bits (94), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 23914 GCTTTTGTTGCCCAAACCCTCACTAAGTATACTGAGGTTCAGGCTAGCAGGAAGCTAGCA 23973 |||| ||| | ||||| | || ||||| |||| || ||||||| ||| | || ||| Sbjct 3 GCTTATGTGTCGCAAACTTTGACCCAGTATGCTGAAGTCAAGGCTAGTAGGCAACTGGCA 62 Query 23974 CAGCAAAAGGTTAATGAGTGCGTCAAATCGCAATCTCAGCGTTACGGTTTTTGTGGTGGT 24033 | |||| |||||||| ||||| ||||| ||||| | | || ||||||| |||| Sbjct 63 ATGGAAAAAGTTAATGAATGCGTGAAATCACAATCGGATAGGTATGGTTTTT---GTGGA 119 Query 24034 GATGGCGAGCACATTTTCTCTCTGGTACAGGCCGCACCTCAGGGCCTGCTGTTCTTACAT 24093 |||| ||| | ||||| || || | | |||||| | || |||| ||||| || Sbjct 120 AATGGAACACACCTGTTCTCACTTGTCAATTCTGCACCTGATGGTTTGCTCTTCTTTCAC 179 Query 24094 ACAGTACT 24101 ||||| || Sbjct 180 ACAGTTCT 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 89346721778940