Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq22 113 4e-21 seq12 89.7 4e-14 >seq22 Length=63420196 Score = 113 bits (124), Expect = 4e-21 Identities = 125/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||| ||||||||||| ||| || || | | |||||| |||||||| || Sbjct 34477774 AGGAGGTTTGAGATGGACCGGGAGCCTGAGGAGGCTCGGTTCTGTGCAGAGTGTAACAGA 34477833 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 | || || ||||| || ||| | ||||| ||||| |||||| ||||||| ||| Sbjct 34477834 CGCCACAGCGCCGAGGAGGGAGACCTGTGGGCCGAGTCCAGCATGCTGGGCCTACGCATC 34477893 Query 5126 ACCTACTTTGCGCTG-ATGGATGGAAAGGTGTATGATATCACAG 5168 || ||||| || ||| |||||||| ||||| || || ||||||| Sbjct 34477894 ACATACTTCGC-CTGCATGGATGGCAAGGTCTACGACATCACAG 34477936 >seq12 Length=91880962 Score = 89.7 bits (98), Expect = 4e-14 Identities = 122/165 (74%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAA-GAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||||||||||| ||||||||||| ||| ||| || | | |||||| |||||||| || Sbjct 52346220 AGGAGGTTTGAGATGGACCGGGAGCCTGCTGAG-GCACGGTTCTGTGCAGAGTGTAACAG 52346162 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 | || || || || || ||| | ||||| ||||| ||| | | ||| | || Sbjct 52346161 ACGCCACAGCGCCGAAGAGGGAGACCTGTGGGCCGAGTCCAGCCTCCTAGGCTTACGCAT 52346102 Query 5125 CACCTACTTTGCGCTG-ATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||| || ||| |||||||| ||||| || || ||||||| Sbjct 52346101 CACCTACTTCGC-CTGCATGGATGGCAAGGTCTACGACATCACAG 52346058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40106178649720