Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_004718.3 Length=29751 Score E Sequences producing significant alignments: (Bits) Value seq139329 170 4e-38 seq96645 159 7e-35 >seq139329 Length=1076 Score = 170 bits (188), Expect = 4e-38 Identities = 263/374 (70%), Gaps = 6/374 (2%) Strand=Plus/Minus Query 15621 AAACATTTCTCCATGATGATTCTTTCTGATGATGCCGTTGTGTGCTATAACAGTAACTAT 15680 || || ||||| ||||||||| | |||||||||| || || || || |||| | ||| Sbjct 600 AAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTAT 541 Query 15681 GCGGCTCAAGGTTTAGTAGCTAGCATTAAGAACTTTAAGGCAGTTCTTTATTATCAAAAT 15740 || | || |||| ||||| |||| |||||||| ||| |||||||| || Sbjct 540 GCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAAC 481 Query 15741 AATGTGTTCATGTCTGAGGCAAAATGTTGGACTGAGACTGACCTTACTAAAGGACCTCAC 15800 |||||||| |||||| || || |||||| || | || |||| | ||||| ||| Sbjct 480 AATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACAC 421 Query 15801 GAATTTTGCTCACAGCATACAATGCTAGTTAAACAAGGAGATGATTACGTGTACCTGCCT 15860 |||||||| ||||| || ||| | | | || | | ||||| | || || | ||| Sbjct 420 GAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCT 361 Query 15861 TACCCAGATCCATCAAGAATATTAGGCGCAGGCTGTTTTGTCGATGATATTGTCAAAACA 15920 || ||||| ||||| ||||| || ||||| |||||| ||||| ||||| || ||| Sbjct 360 TATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACA 301 Query 15921 G---ATGGTACACTTATGATTGAAAGGTTCGTGTCACTGGCTATTGATGCTTACCCACTT 15977 | | | || | ||| ||||| | | ||||| || || |||||||| || ||||| Sbjct 300 GACAACGTTA---TCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTC 244 Query 15978 ACAAAACATCCTAA 15991 |||||||| ||||| Sbjct 243 ACAAAACACCCTAA 230 >seq96645 Length=1578 Score = 159 bits (176), Expect = 7e-35 Identities = 1008/1585 (64%), Gaps = 47/1585 (3%) Strand=Plus/Minus Query 16154 TACAGTCTTGCAGGCTGTAGGTGCTTGTGTATTGTGCAATTCACAGACTTCACTTCGTTG 16213 ||| |||||||| |||| ||| ||||| | || |||||| ||| | ||||| Sbjct 1563 TACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACTGTTTTACGTTG 1504 Query 16214 CGGTGCCTGTATTAGGAGACCATTCCTATGTTGCAAGTGCTGCTATGACCATGTCATTTC 16273 ||| | |||| | || ||||| ||||||| |||||| ||| ||||||||||| Sbjct 1503 CGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGACCATGTCATGGG 1444 Query 16274 AACATCACACAAATTAGTGTTGTCTGTTAATCCCTATGTTTGCAATGCCCCA--GGTTGT 16331 ||| |||||||| | ||||| | | || ||||| || | || | |||||| Sbjct 1443 TACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTA--GCTATAATGGTTGT 1386 Query 16332 GATGTCACTGATGTGACACAACTGTATCTAGGAGGTATGAGCTATTATTGCAAGTCACAT 16391 ||| | |||||| ||| || ||| | | |||||| | | ||||||||| | || Sbjct 1385 ACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATTGTACTGAGCAC 1326 Query 16392 AAGCCTCCCATTA-GTTTTCCATTATGTGCTAATGGTCAGGTTTTTGGTTTATACAAAAA 16450 || || | |||| || || | |||||||||||| | || |||||| | ||||| | Sbjct 1325 AAACC-ACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTCTGTACAAGAG 1267 Query 16451 CACATGTG---TAGGCAGTGACAATGTCACTGACTTCAATGCGATAGCAACATGTGATTG 16507 | ||| | || ||| |||| ||| ||||| | || | || || Sbjct 1266 TA---GTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTTCAGACTG 1210 Query 16508 GACTAATGCTGGCGATTACATACTTGCCAACACTTGTACTGAGAGACTCAAGCTTTTCGC 16567 ||| |||| | ||||| | |||||| || | || || || || ||||||| Sbjct 1209 GACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAATTTTCGC 1150 Query 16568 AGCAGAAACGCTCAAAGCCACTGAGGAAAC-ATTTAAGCTGTCATATGGTATTGCCACTG 16626 || ||||| | ||||| | |||||| | || |||||| ||||| | ||||| Sbjct 1149 TGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTG-AATATGCTTATGCCATAT 1091 Query 16627 TACGCGAAGTACTCTCTGAC---AGAGAATTGCATCTTTCATGGGAGGTTGGAAAACCTA 16683 || || || | || ||| || | ||| | || |||||| || || Sbjct 1090 TAAAGGAGGT--TGTCGGACCTAAGGAAGTTGTA-CTCCAATGGGAATCCTCTAAGATTA 1034 Query 16684 GACCACCATTGAACAGAAACTATGTCTTTACTGGTTACCGTGTAACTAAAAATAGTAAAG 16743 ||| ||| | |||||||| | ||| || || ||| | ||| || ||| |||| Sbjct 1033 AACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACTAAAA 974 Query 16744 TACAGATTGGAGAGTACACCTTTGAAAAAGGTGACTATG---GTGATGCTGTTGTGTACA 16800 | ||| | || || | ||||| | || |||| ||||| ||||| || | Sbjct 973 TTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTACTATA 914 Query 16801 GAGGTACTACGACATAC-AAGTTG--AATGTTGGTGATTACTTTGTGTTGACATCTCACA 16857 | |||||| || ||| ||| || | | ||||| ||||||||||||||||| | Sbjct 913 AAAGTACTAGCAC-TACTAAGCTGGCACCGGGTATGATT--TTTGTGTTGACATCTCATA 857 Query 16858 CTGTAATGCCACTTAGTGCACCTACTCTAGTGCCACAAGAGCACTATGTGAGAAT-TACT 16916 ||| | ||||||| || | | |||| |||||| | || | || | | Sbjct 856 ATGTGAGTCCACTTAAAGCTAACATTTTAGTCAACCAAGAGAAGTACAATACCATATCCA 797 Query 16917 GGCTTGTACCCAACACTCAACATCTCAGATGAGTTTTCTAGCAATGTTG-CAAATTATCA 16975 || | || || || | ||||| | || | | | | | || || || | | ||||| Sbjct 796 AGC-TCTATCCTACGTTTAACATAGCGGAAGCCTATACCA-CATTGGTGCCTTACTATCA 739 Query 16976 AAAGGTCGGCATGCAAAAGTACTCTACACTCCAAGGACCACCTGGTACTGGTAAGAGTCA 17035 || | |||| | |||||| | | || ||||||| || ||||||| |||||| || Sbjct 738 AATGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACA 679 Query 17036 TTTTGCCATCGGACTTGCTCTCTATTACCCATCTGCTCGCATAGTGTATACGGCATGCTC 17095 || || || || | | | | ||||| || ||| | || || || || ||||| || Sbjct 678 TTGTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATGTTC 619 Query 17096 TCATGCAGCTGTTGATGCCCTATGTGAAAAGGCATTAAAATATTTGCCCATAGATAAATG 17155 ||||||||||| ||||| |||||||||| || | || | || | |||||||| Sbjct 618 ACATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATG 559 Query 17156 TAGTAGAATCATACCTGCGCGTGCGCGCGTAGAGTGTTTTGATAAATTCAAAGTGAATTC 17215 | || || |||||| | | || || |||| | || ||| ||| Sbjct 558 TTCAAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACCTAAT-- 501 Query 17216 AACACTA--GAACAGTATGTTTTCTGCACTGTAAATGCATTGCCAGAAAC-AACTGCTGA 17272 || || | | ||| ||| | || ||||| || ||||| ||||| ||| | ||||| ||| Sbjct 500 AATACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTG-TGA 442 Query 17273 CATTGTAGTCTTTGATGAAATCTCTATGGCTACTAATTATGACTTGAGTGTTGTCAATGC 17332 |||||| || | |||||| | || ||| ||| || ||||| | |||||| | ||| Sbjct 441 CATTGTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAATAG 382 Query 17333 TAGACTTCGTGCAAAACACTACGTCTATATTGGCGATCCTGCTCAATTACCAGCCCCCCG 17392 |||||| | ||||| || ||| | || || || ||| | ||||| || | Sbjct 381 TAGACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAG 322 Query 17393 CACATTGCTGACTAAAGGCACACTAGAACCAGAATATTTTAATTCAGTG-TGCAGA-CTT 17450 || ||| | | ||| || ||||| | || || | | ||| ||| |||| | Sbjct 321 AACCTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGAT 262 Query 17451 ATGAAAACAATAGGTCCAGACATGTTCCTTGGA-ACTTGTCGCCGTTGTCCTGCTGAAAT 17509 || |||| |||| || || | || ||| | | ||| | | || || |||||||| Sbjct 261 GTGTAAAC--TAGGACCTGATGTATT-TTTGCACAAATGTTACAGATGCCCAGCTGAAAT 205 Query 17510 TGTTGACACTGTGAGTGCTTTAGTTTATGACAATAAGCTAAAAGCACACAAGGATAAGTC 17569 |||| | || || |||| | |||||||| ||||| | | | ||| | |||| Sbjct 204 TGTTAAAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTGAGTC 145 Query 17570 AGCTCAATGCTTCAAAATGTTCTACAAAGGTGTTATTACACA-TGATGTTTCATCTGCAA 17628 | || ||||| || ||||| | ||| | | | || | ||| | ||| | | Sbjct 144 AAAGCAGTGCTTTAAGATGTT-TGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCTA 86 Query 17629 TCAACAGACCTCAAATAGGCGTTGTAAGAGAATTTCTTACACGCAATCCTGCTTGGAGAA 17688 | |||| ||| ||| ||||| | | |||| | ||| ||||| ||| | | Sbjct 85 TAAACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGTA 26 Query 17689 AAGCTGTTTTTATCTCACCTTATAA 17713 |||||||||| |||||||| ||||| Sbjct 25 AAGCTGTTTTCATCTCACCCTATAA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94819475182430