Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_004905.2 Length=1557 Score E Sequences producing significant alignments: (Bits) Value seq209859 1222 0.0 >seq209859 Length=1262 Score = 1222 bits (1354), Expect = 0.0 Identities = 1021/1250 (82%), Gaps = 0/1250 (0%) Strand=Plus/Plus Query 206 TGATCCAGAACAGTATAACAATAGAGAGAATGGTTCTCTCCGCATTTGATGAAAGGAGGA 265 |||| || || || |||||||||||||||||||| ||||| || ||||| || || |||| Sbjct 13 TGATTCAAAATAGCATAACAATAGAGAGAATGGTGCTCTCTGCTTTTGACGAGAGAAGGA 72 Query 266 ACAGGTACCTAGAGGAACATCCCAGTGCGGGGAAGGACCCGAAGAAGACCGGAGGTCCAA 325 | | |||||||| || ||||||||||| ||||| || || ||||| || ||||| || | Sbjct 73 ATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAAGATCCTAAGAAAACTGGAGGACCCA 132 Query 326 TCTACCGAAGGAGAGACGGGAAATGGGTGAGAGAGCTGATTCTGTATGACAAAGAGGAGA 385 | || ||| | |||||| |||||| |||| || || || || ||||||||||| || | Sbjct 133 TATATAAAAGAATAGACGGAAAATGGATGAGGGAACTCATCCTTTATGACAAAGAAGAAA 192 Query 386 TAAGGAGAATTTGGCGTCAAGCGAACAATGGAGAAGACGCAACTGCTGGTCTCACTCATA 445 |||||||| ||||||| ||||| |||||||| ||||| ||||| || || || || |||| Sbjct 193 TAAGGAGAGTTTGGCGCCAAGCCAACAATGGTGAAGATGCAACAGCCGGCCTTACCCATA 252 Query 446 TGATGATCTGGCATTCCAACCTAAATGATGCCACATACCAGAGAACAAGAGCCCTCGTGC 505 | ||||| ||||| ||||| || ||||||||||| || |||||||||||||| || || | Sbjct 253 TTATGATTTGGCACTCCAATCTGAATGATGCCACCTATCAGAGAACAAGAGCTCTTGTTC 312 Query 506 GGACTGGAATGGACCCCAGAATGTGCTCTCTGATGCAAGGATCAACCCTCCCGAGGAGAT 565 | ||||| ||||| |||||||||||||| || |||||||| ||||| || || || || | Sbjct 313 GCACTGGGATGGATCCCAGAATGTGCTCCCTAATGCAAGGTTCAACACTTCCCAGAAGGT 372 Query 566 CTGGAGCTGCTGGTGCAGCAATAAAGGGAGTCGGGACAATGGTAATGGAACTAATTCGGA 625 ||||||| || ||||| ||| |||| ||||| || ||||| | ||||| |||| | | Sbjct 373 CTGGAGCCGCAGGTGCTGCAGTAAAAGGAGTTGGAACAATAGCGATGGAGTTAATCAGAA 432 Query 626 TGATAAAGCGAGGCATTAATGACCGGAACTTCTGGAGAGGCGATAATGGACGAAGAACAA 685 |||| || || || || |||||||| ||||||||||| || || ||||||||||| |||| Sbjct 433 TGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAAAATGGACGAAGGACAA 492 Query 686 GGATTGCATATGAGAGAATGTGCAACATCCTCAAAGGGAAATTTCAAACAGCAGCACAAA 745 ||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| | Sbjct 493 GGATTGCATATGAAAGAATGTGCAACATTCTCAAAGGGAAATTTCAGACAGCTGCACAGA 552 Query 746 GAGCAATGATGGATCAGGTGCGAGAAAGCAGAAATCCTGGGAATGCTGAAATTGAAGATC 805 | |||||||||||||| ||| ||||||| | || || || || |||||||||||||||| Sbjct 553 GGGCAATGATGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAACGCTGAAATTGAAGATC 612 Query 806 TCATCTTTCTGGCACGGTCTGCACTCATCCTGAGAGGATCCGTAGCCCATAAGTCCTGCT 865 | || || ||||||||||| |||||||| | ||||| || || || |||||||| ||| Sbjct 613 TTATTTTCCTGGCACGGTCAGCACTCATTTTAAGAGGGTCAGTTGCACATAAGTCTTGCC 672 Query 866 TGCCTGCTTGTGTGTACGGGCTCGCTGTGGCCAGTGGATATGATTTTGAGAGGGAAGGGT 925 |||||||||||||||| ||||| || || || ||||| |||| ||||| || ||||| | Sbjct 673 TGCCTGCTTGTGTGTATGGGCTTGCAGTAGCGAGTGGGCATGACTTTGAAAGAGAAGGAT 732 Query 926 ACTCTCTGGTTGGGATAGATCCTTTCCGTCTGCTTCAGAACAGTCAGGTCTTCAGTCTTA 985 | |||||||| |||||||| || ||| || ||||| |||||||| || ||||| || | Sbjct 733 ATTCTCTGGTCGGGATAGACCCCTTCAAACTACTTCAAAACAGTCAAGTATTCAGCCTAA 792 Query 986 TTAGACCAAATGAGAATCCAGCACATAAAAGTCAATTGGTATGGATGGCATGCCATTCTG 1045 | ||||||||||| || ||||| || || |||||| |||| |||||||| ||||| |||| Sbjct 793 TCAGACCAAATGAAAACCCAGCTCACAAGAGTCAACTGGTGTGGATGGCTTGCCACTCTG 852 Query 1046 CAGCATTTGAGGACCTGAGAGTCTCAAGTTTCATTAGAGGAACAAGAGTGATCCCAAGAG 1105 | ||||||||||| | ||||| ||| | ||||| ||||| | || |||| | ||||||| Sbjct 853 CCGCATTTGAGGATTTAAGAGTATCAGGCTTCATAAGAGGGAAAAAAGTGGTTCCAAGAG 912 Query 1106 GACAACTATCCACTAGAGGAGTTCAGATTGCTTCAAATGAGAACGTGGAAGCAATGGATT 1165 || || ||||| ||||| ||||||||||||||||||||||| |||||||| ||||| | Sbjct 913 GAAGGCTTTCCACAAGAGGGGTTCAGATTGCTTCAAATGAGAATGTGGAAGCTATGGACT 972 Query 1166 CCAGCACTCTTGAACTGAGAAGCAGATATTGGGCTATAAGGACCAGGAGTGGAGGAAACA 1225 | || || || ||||| || ||||| || ||||| ||||||||||| || || ||||| | Sbjct 973 CTAGTACCCTGGAACTAAGGAGCAGGTACTGGGCCATAAGGACCAGAAGCGGGGGAAATA 1032 Query 1226 CCAATCAACAGAGAGCATCTGCAGGACAAATCAGTGTACAGCCCACTTTCTCAGTACAGA 1285 |||||||||||| ||||| ||||| || |||||||| || || || ||||||||||| | Sbjct 1033 CCAATCAACAGAAGGCATCCGCAGGCCAGATCAGTGTGCAACCTACATTCTCAGTACAAA 1092 Query 1286 GAAATCTTCCCTTCGAAAGACCGACCATTATGGCTGCGTTTAAGGGGAATACCGAGGGCA 1345 | ||||| || || || ||| ||||| ||||||| || || | ||| | | ||||| Sbjct 1093 GGAATCTCCCTTTTGAGAGAGCGACCGTTATGGCAGCTTTCATTGGGGACAATGAGGGAC 1152 Query 1346 GAACATCTGACATGAGGACTGAAATCATAAGGATGATGGAAAGTGCCAGACCAGAAGATG 1405 | ||||| || ||| | ||||||||||||||||||||||||||||| | ||||||||| Sbjct 1153 GGACATCAGATATGCGAACTGAAATCATAAGGATGATGGAAAGTGCAAAGCCAGAAGATT 1212 Query 1406 TGTCTTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACG 1455 |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1213 TGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAACG 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4861578549790