Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_004907.1 Length=1025 Score E Sequences producing significant alignments: (Bits) Value seq197496 1342 0.0 >seq197496 Length=1027 Score = 1342 bits (1488), Expect = 0.0 Identities = 902/1007 (90%), Gaps = 0/1007 (0%) Strand=Plus/Minus Query 10 CAAAAGCAGGTAGATATTGAAAGATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCTCT 69 ||||||||||||||| || ||||||||| ||||||||||||||||||||||| ||||||| Sbjct 1024 CAAAAGCAGGTAGATGTTTAAAGATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCTCT 965 Query 70 CTATCATCCCATCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTTGAGGATGTTTTTG 129 ||||| | || ||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 964 CTATCGTTCCGTCAGGCCCCCTCAAAGCCGAGATAGCGCAGAGACTTGAAGATGTTTTTG 905 Query 130 CAGGGAAGAACACAGATCTTGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCCTGT 189 ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 904 CAGGGAAAAACACCGATCTTGAGGCACTCATGGAATGGCTAAAGACAAGACCAATCCTGT 845 Query 190 CACCTCTGACTAAGGGGATTTTAGGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCGAG 249 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 844 CACCTCTGACTAAGGGGATTTTAGGATTTGTATTCACGCTCACCGTGCCCAGTGAGCGAG 785 Query 250 GACTGCAGCGTAGACGATTTGTCCAAAATGCCCTAAATGGGAATGGAGACCCAAACAACA 309 |||||||||||||||| |||||||| |||||||| |||||||| || ||||| ||||||| Sbjct 784 GACTGCAGCGTAGACGCTTTGTCCAGAATGCCCTCAATGGGAACGGTGACCCGAACAACA 725 Query 310 TGGACAGGGCAGTTAAACTATACAAGAAGCTGAAGAGGGAAATGACATTCCATGGAGCAA 369 |||||| || || ||||| |||| || || || |||||||| |||||||| || || | Sbjct 724 TGGACAAAGCGGTCAAACTGTACAGAAAACTCAAAAGGGAAATAACATTCCACGGGGCCA 665 Query 370 AGGAAGTTGCACTCAGTTACTCAACTGGTGCGCTTGCCAGTTGCATGGGTCTCATATACA 429 | ||||| || |||||||| || ||||||| ||||||||||||||||| |||||||||| Sbjct 664 AAGAAGTAGCGCTCAGTTATTCTGCTGGTGCACTTGCCAGTTGCATGGGCCTCATATACA 605 Query 430 ACCGGATGGGAACAGTGACCACAGAAGTGGCTCTTGGCCTAGTATGTGCCACTTGTGAAC 489 || | ||||| || || ||||| || ||||| |||| |||||||| || || ||||||| Sbjct 604 ACAGAATGGGGACTGTCACCACTGAGGTGGCATTTGGTCTAGTATGCGCAACCTGTGAAC 545 Query 490 AGATTGCTGATGCCCAACATCGGTCCCACAGGCAGATGGCGACTACCACCAACCCACTAA 549 ||||||||||| |||| ||||| || || || || |||| ||| || ||||| ||||||| Sbjct 544 AGATTGCTGATTCCCAGCATCGATCTCATAGACAAATGGTGACAACAACCAATCCACTAA 485 Query 550 TCAGGCATGAGAACAGAATGGTACTAGCCAGCACTACGGCTAAGGCCATGGAGCAGATGG 609 ||||||||||||||||||||||| |||||||||| |||||||| |||||||| || |||| Sbjct 484 TCAGGCATGAGAACAGAATGGTATTAGCCAGCACAACGGCTAAAGCCATGGAACAAATGG 425 Query 610 CTGGATCAAGTGAGCAGGCAGCAGAAGCCATGGAAGTCGCAAGTCAGGCTAGGCAAATGG 669 ||||||||||||| || |||||||| |||||||| || || || |||||||||||||||| Sbjct 424 CTGGATCAAGTGAACAAGCAGCAGAGGCCATGGAGGTTGCCAGCCAGGCTAGGCAAATGG 365 Query 670 TGCAGGCTATGAGGACAATTGGGACTCACCCTAGTTCCAGTGCAGGTCTAAAAGATGATC 729 | ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 364 TACAGGCAATGAGAACAATTGGGACTCACCCTAGTTCCAGTGCTGGTCTAAAAGATGATC 305 Query 730 TTATTGAAAATTTGCAGGCTTACCAGAAACGGATGGGAGTGCAAATGCAGAGATTCAAGT 789 || |||||||||| ||||| || ||||| || ||||| ||||| ||||| ||||||||| Sbjct 304 TTCTTGAAAATTTACAGGCCTATCAGAAGCGAATGGGGGTGCAGATGCAACGATTCAAGT 245 Query 790 GATCCTCTCGTTGTTGCAGCAAGTATCATTGGGATATTGCACTTGATATTGTGGATTCTT 849 ||||||||||||| ||| ||||| ||||||||||| |||||| ||||||||||||||||| Sbjct 244 GATCCTCTCGTTGCTGCCGCAAGCATCATTGGGATTTTGCACCTGATATTGTGGATTCTT 185 Query 850 GATCGTCTTTTCTTCAAATGCATTTATCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCT 909 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 184 GATCGTCTTTTTTTCAAATGCATTTACCGTCGCTTTAAATACGGTTTGAAAAGAGGGCCT 125 Query 910 TCTACGGAAGGAGTGCCTGAGTCTATGAGGGAAGAGTATCGGCAGGAACAGCAGAATGCT 969 ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||| Sbjct 124 TCTACGGAAGGAGTGCCGGAGTCTATGAGGGAAGAATATCGGCAGAAACAGCAGAGTGCT 65 Query 970 GTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTGGAGTAAAA 1016 |||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 64 GTGGATGTTGACGATGGTCATTTTGTCAACATAGTGCTAGAGTAAAA 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3166800173920