Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_004909.1 Length=1418 Score E Sequences producing significant alignments: (Bits) Value seq63787 1306 0.0 >seq63787 Length=1469 Score = 1306 bits (1448), Expect = 0.0 Identities = 1144/1424 (80%), Gaps = 6/1424 (0%) Strand=Plus/Plus Query 1 ATGAATCCAAATCAAAAGATAATAGCACTTGGCTCTGTTTCTATAACTATTGCGACAATA 60 |||||||||||||||||||||||| | |||||||||||||| | || ||| | |||||| Sbjct 21 ATGAATCCAAATCAAAAGATAATAACGATTGGCTCTGTTTCTCTCACCATTTCCACAATA 80 Query 61 TGTTTACTCATGCAGATTGCCATCTTAGCAACGACTATGACACTACATTTCAA------T 114 || || ||||||| ||||||||||| ||| ||| | ||| | |||||||| | Sbjct 81 TGCTTCTTCATGCAAATTGCCATCTTGATAACTACTGTAACATTGCATTTCAAGCAATAT 140 Query 115 GAATGTACCAACCCATCGAACAATCAAGCAGTGCCATGTGAACCAATCATAATAGAAAGG 174 |||| | | ||| | ||||| |||| ||| |||||||||| ||||||||||| Sbjct 141 GAATTCAACTCCCCCCCAAACAACCAAGTGATGCTGTGTGAACCAACAATAATAGAAAGA 200 Query 175 AACATAACAGAGATAGTGCATTTGAATAATACTACCATAGAGAAGGAAAGTTGTCCTAAA 234 |||||||||||||||||| || ||| || || |||||||||||||||| || || ||| Sbjct 201 AACATAACAGAGATAGTGTATCTGACCAACACCACCATAGAGAAGGAAATATGCCCCAAA 260 Query 235 GTAGCAGAATACAAGAATTGGTCAAAACCGCAATGTCAAATTACAGGGTTCGCCCCTTTC 294 ||||||||||| ||||||||||||||||||||| |||||||| || || |||||| Sbjct 261 CCAGCAGAATACAGAAATTGGTCAAAACCGCAATGTGGCATTACAGGATTTGCACCTTTC 320 Query 295 TCCAAGGACAACTCAATTAGGCTTTCTGCAGGCGGGGATATTTGGGTGACAAGAGAACCT 354 || |||||||| || ||||||||||| || || ||||| || |||||||||||||||||| Sbjct 321 TCTAAGGACAATTCGATTAGGCTTTCCGCTGGTGGGGACATCTGGGTGACAAGAGAACCT 380 Query 355 TATGTATCGTGCGGTCTTGGTAAATGTTACCAATTTGCACTTGGGCAGGGAACCACTTTG 414 ||||| || |||| || || || ||||| |||||||| ||||| |||||||| || | Sbjct 381 TATGTGTCATGCGATCCTGACAAGTGTTATCAATTTGCCCTTGGACAGGGAACAACACTA 440 Query 415 AACAACAAACACTCAAATGGCACAATACATGATAGGAGTCCCCATAGAACCCTTTTAATG 474 |||||| || |||||| |||| ||| |||||||| || || | || || || ||| Sbjct 441 AACAACGTGCATTCAAATAACACAGTACGTGATAGGACCCCTTATCGGACTCTATTGATG 500 Query 475 AACGAGTTGGGTGTTCCATTTCATTTGGGAACCAAACAAGTGTGCATAGCATGGTCCAGC 534 || |||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||| Sbjct 501 AATGAGTTGGGTGTTCCTTTTCATCTGGGGACCAAGCAAGTGTGCATAGCATGGTCCAGC 560 Query 535 TCAAGCTGCCATGATGGGAAGGCATGGTTACATGTTTGTGTCACTGGGGATGATAGAAAT 594 ||||| || || ||||| || |||||| | ||||||||| | || |||||||||| |||| Sbjct 561 TCAAGTTGTCACGATGGAAAAGCATGGCTGCATGTTTGTATAACGGGGGATGATAAAAAT 620 Query 595 GCGACTGCTAGCATCATTTATGATGGGATGCTTACCGACAGTATTGGTTCATGGTCTAAG 654 || ||||||||| ||||||| |||||| |||| || ||| ||| ||||||||| || Sbjct 621 GCAACTGCTAGCTTCATTTACAATGGGAGGCTTGTAGATAGTGTTGTTTCATGGTCCAAA 680 Query 655 AACATCCTCAGAACTCAGGAGTCAGAATGCGTTTGCATCAATGGAACTTGTACAGTAGTA 714 | || ||||| || |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 681 GAAATTCTCAGGACCCAGGAGTCAGAATGCGTTTGTATCAATGGAACTTGTACAGTAGTA 740 Query 715 ATGACTGATGGAAGTGCATCAGGAAGGGCTGATACTAAAATACTATTCATTAGAGAAGGG 774 ||||||||||||||||| ||||||| |||||||||||||||||||||||| || ||| Sbjct 741 ATGACTGATGGAAGTGCTTCAGGAAAAGCTGATACTAAAATACTATTCATTGAGGAGGGG 800 Query 775 AAAATTGTCCACATTGGTCCACTGTCAGGAAGTGCTCAGCATGTGGAGGAATGCTCCTGT 834 ||||| || || | | | || |||||||||||||||||||||| || || ||||| || Sbjct 801 AAAATCGTTCATACTAGCACATTGTCAGGAAGTGCTCAGCATGTCGAAGAGTGCTCTTGC 860 Query 835 TACCCCCGGTATCCAGAAGTTAGATGTGTTTGCAGAGACAATTGGAAGGGCTCCAATAGA 894 || || || ||||| | || |||||||| ||||||||||| ||||| ||||||||| | Sbjct 861 TATCCTCGATATCCTGGTGTCAGATGTGTCTGCAGAGACAACTGGAAAGGCTCCAATCGG 920 Query 895 CCCGTGCTATATATAAATGTGGCAGATTATAGTGTTGATTCTAGTTATGTGTGCTCAGGA 954 ||| | || ||||||| | ||| |||| ||| ||| ||||||||||| |||||| Sbjct 921 CCCATCGTAGATATAAACATAAAGGATCATAGCATTGTTTCCAGTTATGTGTGTTCAGGA 980 Query 955 CTTGTTGGCGACACACCAAGAAATGACGATAGCTCCAGCAGCAGTAACTGCAGGGATCCT 1014 |||||||| |||||||| ||||| |||| ||||||||||| || | || ||||||| Sbjct 981 CTTGTTGGAGACACACCCAGAAAAAACGACAGCTCCAGCAGTAGCCATTGTTTGGATCCT 1040 Query 1015 AATAACGAGAGAGGGGGCCCAGGAGTGAAAGGGTGGGCCTTTGACAATGGAAATGATGTT 1074 || || || ||| || | ||||||||||| ||||||||||| |||||||||| || Sbjct 1041 AACAATGAAGAAGGTGGTCATGGAGTGAAAGGCTGGGCCTTTGATGATGGAAATGACGTG 1100 Query 1075 TGGATGGGACGAACAATCAAGAAAGATTCGCGCTCTGGTTATGAGACTTTCAGGGTCGTT 1134 ||||||||| |||||||||| | || |||| || ||||| || |||| ||| || Sbjct 1101 TGGATGGGAAGAACAATCAACGAGACGTCACGCTTAGGGTATGAAACCTTCAAAGTCATT 1160 Query 1135 GGTGGTTGGACTACGGCTAATTCCAAGTCACAAATAAATAGGCAAGTCATAGTTGACAGT 1194 | || ||| | | |||| ||||| | || |||||||||||||||||||||||||| Sbjct 1161 GAAGGCTGGTCCAACCCTAAGTCCAAATTGCAGATAAATAGGCAAGTCATAGTTGACAGA 1220 Query 1195 GATAACTGGTCTGGGTATTCTGGTATATTCTCTGTTGAAGGAAAAACCTGCATCAACAGG 1254 | | | |||| || ||||||||||| |||||||||||||| |||| ||||||||| || Sbjct 1221 GGTGATAGGTCCGGTTATTCTGGTATTTTCTCTGTTGAAGGCAAAAGCTGCATCAATCGG 1280 Query 1255 TGTTTTTATGTGGAGTTGATAAGAGGGAGACCACAGGAGACCAGAGTATGGTGGACTTCA 1314 || ||||||||||||||||| || || ||| | |||| || ||| | |||||| ||| Sbjct 1281 TGCTTTTATGTGGAGTTGATTAGGGGAAGAAAAGAGGAAACTGAAGTCTTGTGGACCTCA 1340 Query 1315 AATAGCATCATTGTATTTTGTGGAACTTCAGGTACCTATGGAACAGGCTCATGGCCTGAT 1374 || || || |||| |||||||| || |||||||| |||||||||||||||||||||||| Sbjct 1341 AACAGTATTGTTGTGTTTTGTGGCACCTCAGGTACATATGGAACAGGCTCATGGCCTGAT 1400 Query 1375 GGAGCGAATATCAATTTCATGTCTATATAAGCTTTCGCAATTTT 1418 || ||| | ||||| ||||| |||||||||||||||||||||| Sbjct 1401 GGGGCGGACCTCAATCTCATGCCTATATAAGCTTTCGCAATTTT 1444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4417875714320