Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_004911.1 Length=2328 Score E Sequences producing significant alignments: (Bits) Value seq205407 2298 0.0 >seq205407 Length=1958 Score = 2298 bits (2548), Expect = 0.0 Identities = 1679/1946 (86%), Gaps = 2/1946 (0%) Strand=Plus/Plus Query 384 AAGCTGACCCAAGGTCGCCAGACTTATGACTGGACATTGAATAGAAACCAGCCGGCTGCA 443 || || |||||||||||||| |||||||| |||||||| || ||||| || ||||| ||| Sbjct 3 AAACTAACCCAAGGTCGCCAAACTTATGATTGGACATTAAACAGAAATCAACCGGCAGCA 62 Query 444 ACTGCTTTGGCCAACACCATAGAAGTATTCAGATCGAACGGTCTAACAGCCAATGAGTCA 503 ||||| || ||||||||||||||||| || ||||||||||| ||||||| ||||| ||| Sbjct 63 ACTGCATTAGCCAACACCATAGAAGTCTTTAGATCGAACGGATTAACAGCTAATGAATCA 122 Query 504 GGAAGGTTAATAGATTTCCTCAAGGACGTAATGGAATCAATGGATAAGGAAGAAATGGAA 563 |||||| ||||||||||||||||||| || ||||||||||||||||| || |||||||| Sbjct 123 GGAAGGCTAATAGATTTCCTCAAGGATGTGATGGAATCAATGGATAAAGAGGAAATGGAG 182 Query 564 ATAACAACACATTTCCAGAGAAAGAGAAGAGTGAGGGACAACATGACCAAGAAAATGGTC 623 ||||||||||| || || ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 183 ATAACAACACACTTTCAAAGAAAAAGGAGAGTAAGGGACAACATGACCAAGAAAATGGTC 242 Query 624 ACACAAAGAACAATAGGGAAGAAGAAGCAAAAGCTGACAAAAAAGA-GCTACCTAATAAG 682 ||||||||||||||||||||||| ||||||| ||| | || ||| ||||||||||||| Sbjct 243 ACACAAAGAACAATAGGGAAGAAAAAGCAAAGAGTGA-ATAAGAGAGGCTACCTAATAAG 301 Query 683 AGCACTGACACTGAACACAATGACAAAAGATGCTGAAAGGGGAAAATTGAAAAGACGAGC 742 ||| ||||| ||||||| ||||| |||||||| || || || ||||| |||||| | || Sbjct 302 AGCTTTGACATTGAACACGATGACCAAAGATGCAGAGAGAGGCAAATTAAAAAGAAGGGC 361 Query 743 GATTGCAACACCCGGAATGCAAATCAGAGGATTCGTGCACTTTGTCGAAGCACTAGCAAG 802 |||||||||||||| |||||||| ||||| |||||| |||| || ||| | |||| || Sbjct 362 TATTGCAACACCCGGGATGCAAATTAGAGGGTTCGTGTACTTCGTTGAAACTTTAGCTAG 421 Query 803 GAGCATCTGTGAAAAACTTGAGCAATCTGGACTCCCCGTTGGAGGGAATGAGAAGAAGGC 862 ||||| || ||||| ||||| ||||||||||| || ||||| || ||||| |||||||| Sbjct 422 AAGCATTTGCGAAAAGCTTGAACAATCTGGACTTCCGGTTGGGGGTAATGAAAAGAAGGC 481 Query 863 TAAATTGGCAAATGTTGTGAGAAAGATGATGACTAACTCACAAGACACAGAGCTCTCCTT 922 ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct 482 CAAACTGGCAAATGTTGTGAGAAAAATGATGACTAATTCACAAGACACAGAGCTTTCTTT 541 Query 923 TACAGTTACCGGAGACAACACCAAATGGAATGAGAATCAGAATCCTCGAATATTTCTAGC 982 ||| | || || |||||||| || |||||||| ||||| || || ||||| ||| | || Sbjct 542 CACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAACCCCCGAATGTTTTTGGC 601 Query 983 AATGATAACATACATCACAAGGAACCAACCTGAATGGTTTAGAAATGTCTTGAGCATTGC 1042 ||||| ||||||||||||| ||| |||||||||||||| ||||| || ||||||| || Sbjct 602 GATGATTACATACATCACAAAGAATCAACCTGAATGGTTCAGAAACATCCTGAGCATCGC 661 Query 1043 CCCTATAATGTTCTCAAATAAAATGGCGAGGTTAGGAAAAGGATACATGTTCGAGAGTAA 1102 || |||||||||||||| |||||||| || | |||||||||||||||||||||||||| Sbjct 662 ACCAATAATGTTCTCAAACAAAATGGCAAGACTGGGAAAAGGATACATGTTCGAGAGTAA 721 Query 1103 GAGCATGAAGCTACGGACACAAATACCAGCAGAAATGCTTGCAAACATTGACTTGAAATA 1162 ||| |||||||| |||||||||||||| ||||||||||| |||| ||||||| |||| || Sbjct 722 GAGAATGAAGCTCCGGACACAAATACCTGCAGAAATGCTAGCAAGCATTGACCTGAAGTA 781 Query 1163 CTTCAACGAATCGACGAGAAAGAAAATTGAGAAAATAAGACCTCTACTAATAGAGGGCAC 1222 ||||| ||||| || || |||||||||||||||||||| ||||| |||||||| ||||| Sbjct 782 TTTCAATGAATCAACAAGGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCAC 841 Query 1223 AGCCTCATTGAGTCCAGGGATGATGATGGGCATGTTTAATATGCTAAGTACGGTCTTAGG 1282 ||| |||||||| || || ||||||||||||||||| || ||||||||||| || ||||| Sbjct 842 AGCATCATTGAGCCCTGGAATGATGATGGGCATGTTCAACATGCTAAGTACAGTTTTAGG 901 Query 1283 AGTCTCAATCTTAAATCTTGGGCAGAAGAGGTACACCAAAACCACATACTGGTGGGATGG 1342 |||||| || | |||||||| || |||| |||||||| || ||||||||||||||||| Sbjct 902 AGTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAACATACTGGTGGGATGG 961 Query 1343 GCTCCAATCCTCTGATGATTTCGCTCTCATAGTGAATGCACCAAATCATGAGGGAATACA 1402 |||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||| Sbjct 962 GCTCCAATCCTCAGACGATTTTGCCCTCATAGTGAATGCACCAAATCATGAGGGAATACA 1021 Query 1403 AGCAGGAGTGGATAGATTCTATAGGACTTGCAAGCTAGTTGGAATCAACATGAGCAAAAA 1462 ||||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||| Sbjct 1022 AGCAGGAGTGGATAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAA 1081 Query 1463 GAAGTCTTACATAAATCGGACAGGAACATTTGAGTTCACAAGCTTTTTCTACCGCTATGG 1522 |||||| || |||||| ||||| |||||||| ||||| |||||||| || || ||||| Sbjct 1082 GAAGTCCTATATAAATAAAACAGGGACATTTGAATTCACTAGCTTTTTTTATCGATATGG 1141 Query 1523 GTTTGTAGCCAACTTCAGCATGGAGCTGCCCAGCTTTGGAGTTTCCGGAATTAATGAATC 1582 ||||| || || || |||||||||||||| || |||||||| || ||||| || || || Sbjct 1142 ATTTGTGGCTAATTTTAGCATGGAGCTGCCAAGTTTTGGAGTGTCTGGAATAAACGAGTC 1201 Query 1583 GGCTGACATGAGCATTGGAGTTACAGTGATAAAGAATAATATGATAAACAACGACCTTGG 1642 |||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||| Sbjct 1202 AGCTGACATGAGCATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGG 1261 Query 1643 ACCAGCAACAGCCCAGATGGCTCTTCAGCTGTTCATTAAAGACTACAGATACACCTACCG 1702 ||||||||||||||| |||||||| || ||||||| ||||| ||||||||||| || || Sbjct 1262 ACCAGCAACAGCCCAAATGGCTCTCCAATTGTTCATCAAAGATTACAGATACACATATCG 1321 Query 1703 ATGCCACAGAGGTGATACACAAATTCAAACTAGAAGATCATTTGAATTGAAGAAGCTGTG 1762 ||||| ||||| || |||||||| ||||| ||||||||||| || | ||||||||||| Sbjct 1322 GTGCCATAGAGGAGACACACAAATCCAAACGAGAAGATCATTCGAGATAAAGAAGCTGTG 1381 Query 1763 GGAGCAGACCCGCTCAAAGGCAGGACTGTTGGTTTCAGATGGAGGGCCGAATTTATACAA 1822 ||| || |||| |||| | ||||||| ||||| |||||||| || || || |||||||| Sbjct 1382 GGATCAAACCCAATCAAGGACAGGACTATTGGTATCAGATGGGGGACCAAACTTATACAA 1441 Query 1823 CATCCGGAATCTTCACATTCCAGAAGTTTGCTTGAAGTGGGAGTTGATGGATGAAGATTA 1882 ||||||||||||||||| || ||||| ||||| ||||||||| |||||||||| |||| Sbjct 1442 TATCCGGAATCTTCACATCCCTGAAGTCTGCTTAAAGTGGGAGCTGATGGATGAGAATTA 1501 Query 1883 CCAGGGAAGACTGTGTAACCCTCTGAACCCGTTTGTCAGTCATAAGGAAGTTGAATCCGT 1942 | ||||||||| ||||| || ||||| || |||||||| ||||| ||| |||| || || Sbjct 1502 TCGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGCCATAAAGAAATTGAGTCTGT 1561 Query 1943 CAACAATGCTGTGGTAATGCCAGCCCATGGTCCGGCCAAGAGCATGGAATATGATGCCGT 2002 ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1562 AAACAATGCTGTAGTAATGCCAGCCCATGGTCCGGCCAAAAGTATGGAATATGATGCCGT 1621 Query 2003 TGCAACTACACATTCATGGATTCCCAAGAGAAATCGCTCCATTCTCAACACTAGCCAAAG 2062 |||||||||||| || ||||||||||| || || ||||| ||||| ||||| |||||||| Sbjct 1622 TGCAACTACACACTCCTGGATTCCCAAAAGGAACCGCTCTATTCTAAACACAAGCCAAAG 1681 Query 2063 GGGAATTCTTGAGGATGAACAAATGTACCAGAAGTGCTGCACTCTATTCGAGAAATTCTT 2122 ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| || Sbjct 1682 GGGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACTTGTTCGAGAAATTTTT 1741 Query 2123 CCCTAGCAGTTCATATCGGAGGCCAGTTGGAATTTCCAGCATGATGGAGGCCATGGTGTC 2182 |||||| ||||||||| |||| || |||||||||| |||||| |||||||||||||||| Sbjct 1742 CCCTAGTAGTTCATATAGGAGACCGATTGGAATTTCTAGCATGGTGGAGGCCATGGTGTC 1801 Query 2183 TAGGGCCCGAATTGATGCACGGATTGACTTCGAGTCTGGAAGGATTAAGAAAGAAGAATT 2242 ||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||| || Sbjct 1802 TAGGGCCCGGATTGATGCCAGAATTGACTTCGAGTCTGGAAGGATTAAGAAGGAAGAGTT 1861 Query 2243 TGCTGAGATCTTGAAGATCTGTTCCACCATTGAAGAGCTCGGACGGCAAGGGAAGTGAAT 2302 |||||||| ||||||||||||||||||||||||| ||| |||||||| | ||||| Sbjct 1862 CTCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAATGAAT 1921 Query 2303 TTGGCTTGTCCTTCATGAAAAAATGC 2328 || ||||||||||||||||||||||| Sbjct 1922 TTAGCTTGTCCTTCATGAAAAAATGC 1947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7322692838620