Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_004912.1 Length=2225 Score E Sequences producing significant alignments: (Bits) Value seq208890 2172 0.0 >seq208890 Length=2206 Score = 2172 bits (2408), Expect = 0.0 Identities = 1800/2201 (82%), Gaps = 0/2201 (0%) Strand=Plus/Minus Query 1 AAAGCAGGTACTGATCCAAAATGGAAGACTTTGTGCGACAGTGCTTCAATCCAATGATTG 60 ||||||||||||||| | |||||||||| ||||||||||| |||||||| || ||||||| Sbjct 2201 AAAGCAGGTACTGATTCGAAATGGAAGATTTTGTGCGACAATGCTTCAACCCGATGATTG 2142 Query 61 TCGAGCTTGCGGAAAAGACAATGAAGGAATATGGGGAAGACCCGAAAATTGAAACAAATA 120 |||| ||||| ||||| ||||||| || |||||||| || | |||||||||||| || | Sbjct 2141 TCGAACTTGCAGAAAAAGCAATGAAAGAGTATGGGGAGGATCTGAAAATTGAAACCAACA 2082 Query 121 AGTTCGCTGCAATATGCACACACTTAGAAGTCTGCTTCATGTATTCAGACTTCCATTTCA 180 | || || |||||||| || ||||| || || || |||||||||||||| |||||||||| Sbjct 2081 AATTTGCAGCAATATGTACTCACTTGGAGGTGTGTTTCATGTATTCAGATTTCCATTTCA 2022 Query 181 TTGACGAACGAGGCGAATCAATAATTGTGGAATCTGGTGATCCAAATGCATTGTTGAAGC 240 | | |||| ||||||||||||| | || ||| || |||||||||||| || | |||| Sbjct 2021 TCAATGAACAAGGCGAATCAATAGTGGTAGAACTTGACGATCCAAATGCACTGCTAAAGC 1962 Query 241 ACAGGTTTGAAATAATTGAAGGAAGAGACCGAGCAATGGCCTGGACAGTGGTGAATAGCA 300 |||| ||||||||||| || || |||||| || |||||||||||||||| || || || | Sbjct 1961 ACAGATTTGAAATAATCGAGGGGAGAGACAGAACAATGGCCTGGACAGTAGTAAACAGTA 1902 Query 301 TCTGCAACACAACAGGAGTCGATAAACCCAAATTTCTTCCGGATCTATACGACTACAAGG 360 |||||||||| || |||| | ||||| || ||||| |||||| | || || ||||| | Sbjct 1901 TCTGCAACACTACTGGAGCTGGAAAACCGAAGTTTCTACCGGATTTGTATGATTACAAAG 1842 Query 361 AAAACCGATTCACTGAAATTGGTGTGACACGGAGGGAAGTTCACATATATTACTTAGAAA 420 | ||| |||||| |||||||| |||||| |||| ||||| |||||||||||| | |||| Sbjct 1841 AGAACAGATTCATCGAAATTGGAGTGACAAGGAGAGAAGTCCACATATATTACCTTGAAA 1782 Query 421 AAGCTAACAAGATAAAATCCGAGAAAACACATATCCACATCTTTTCATTCACTGGAGAAG 480 | || || ||||| ||||| ||||| ||||| || ||||| |||||||||||||| || | Sbjct 1781 AGGCCAATAAGATTAAATCTGAGAACACACACATTCACATTTTTTCATTCACTGGGGAGG 1722 Query 481 AAATGGCCACTAAAGCTGACTACACCCTTGATGAAGAGAGCAGGGCAAGAATAAAAACCA 540 |||||||||| || || |||||||| || || || || |||||||| || || ||||||| Sbjct 1721 AAATGGCCACAAAGGCAGACTACACTCTCGACGAGGAAAGCAGGGCTAGGATTAAAACCA 1662 Query 541 GACTATTCACCATAAGACAGGAAATGGCAAGCAGGGGTCTATGGGATTCCTTTCGTCAGT 600 | || || ||||||||||| |||||||| | ||| || || ||||||||||||||||||| Sbjct 1661 GGCTGTTTACCATAAGACAAGAAATGGCCAACAGAGGCCTCTGGGATTCCTTTCGTCAGT 1602 Query 601 CCGAGAGAGGCGAAGAGACAATTGAAGAAAGATTTGAAATCACAGGGACCATGCGTAGGC 660 |||| ||||||||||| ||||||||||||| ||||||||||||||| || ||||| |||| Sbjct 1601 CCGAAAGAGGCGAAGAAACAATTGAAGAAAAATTTGAAATCACAGGAACTATGCGCAGGC 1542 Query 661 TTGCCGACCAAAGTCTCCCACCTAACTTCTCCAGCCTTGAAAACTTTAGAGCCTATGTGG 720 |||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||| Sbjct 1541 TTGCCGACCAAAGTCTCCCACCGAACTTCTCCTGCCTTGAGAATTTTAGAGCCTATGTGG 1482 Query 721 ATGGATTCAAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCGAAAGAAGTGA 780 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1481 ATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAAGTGA 1422 Query 781 ACGCCAGAATTGAGCCATTTCTGAAGACAACACCACGTCCCCTCAGATTGCCTGATGGAC 840 | ||| |||||| || |||||||||||||||||| | || ||| | | ||| |||||| Sbjct 1421 ATGCCCAAATTGAACCTTTTCTGAAGACAACACCAAGACCAATCAAACTTCCTAATGGAC 1362 Query 841 CTCCCTGCTCCCAGCGGTCGAAATTCTTGCTGATGGATGCTCTGAAATTAAGCATTGAGG 900 |||| || | |||||||| |||||| | |||||||||||| ||||||| |||||||| | Sbjct 1361 CTCCTTGTTATCAGCGGTCCAAATTCCTCCTGATGGATGCTTTGAAATTGAGCATTGAAG 1302 Query 901 ACCCGAGCCATGAGGGGGAGGGGATACCGCTATATGATGCGATAAAATGCATGAAAACAT 960 |||| || || || || || ||||| || ||||||||||||| || ||||| ||||||| Sbjct 1301 ACCCAAGTCACGAAGGAGAAGGGATCCCATTATATGATGCGATCAAGTGCATAAAAACAT 1242 Query 961 TCTTCGGCTGGAGAGAGCCCAACATCATCAAGCCACACGAGAAGGGCATAAATCCCAATT 1020 |||| || |||| ||| || | || |||| |||||||| ||||| |||||| | |||| Sbjct 1241 TCTTTGGATGGAAAGAACCTTATATAGTCAAACCACACGAAAAGGGAATAAATTCAAATT 1182 Query 1021 ATCTTCTGGCTTGGAAGCAGGTGCTGGCAGAACTCCAGGATATTGAAAATGAGGATAAAA 1080 | || ||| | |||||||| || ||| ||||| | ||||| |||||||||||||| || | Sbjct 1181 ACCTGCTGTCATGGAAGCAAGTACTGTCAGAATTGCAGGACATTGAAAATGAGGAGAAGA 1122 Query 1081 TCCCAAAAACAAAGAACATGAAGAAAACAAGCCAATTAATGTGGGCACTCGGGGAGAATA 1140 | |||| ||| || |||||||||||||| || ||| | | |||||| || || || || | Sbjct 1121 TTCCAAGAACTAAAAACATGAAGAAAACGAGTCAACTGAAGTGGGCTCTTGGTGAAAACA 1062 Query 1141 TGGCACCGGAAAAATTGGACTTTGAGGACTGCAAAGATATTGGCGATCTGAAACAGTATC 1200 ||||||| || || | |||||||| |||||| ||| || ||||| |||| || ||| Sbjct 1061 TGGCACCAGAGAAGGTAGACTTTGAAAACTGCAGAGACATAAGCGATTTGAAGCAATATG 1002 Query 1201 AAAGTGATGAGCCAGAGCTCAGATCGATAGCAAGCTGGATCCAGAGTGAGTTCAACAAGG 1260 | ||||| || || || | || || | |||||||||| ||||||||||||||||||| Sbjct 1001 ATAGTGAAGAACCTGAATTAAGGTCACTTTCAAGCTGGATACAGAGTGAGTTCAACAAGG 942 Query 1261 CATGTGAATTGACCGATTCGAGCTGGATAGAACTCGATGAGATAGGGGAAGATGTTGCCC 1320 | ||||| | || ||||| ||||||||| |||||||| || || || || || |||| Sbjct 941 CCTGTGAGCTAACTGATTCAGTCTGGATAGAGCTCGATGAAATTGGAGAGGACGTAGCCC 882 Query 1321 CAATTGAGCACATTGCAAGCATGAGAAGGAACTACTTCACAGCGGAAGTGTCTCATTGCA 1380 ||||||||||||||||||||||||||||||| || |||||||| || ||||| ||||| | Sbjct 881 CAATTGAGCACATTGCAAGCATGAGAAGGAATTATTTCACAGCAGAGGTGTCCCATTGTA 822 Query 1381 GGGCCACTGAGTACATAATGAAGGGGGTTTACATAAATACAGCTTTGCTCAATGCATCTT 1440 | || ||||| ||||||||||||||||| ||||| || || || ||||||||||||| | Sbjct 821 GAGCTACTGAATACATAATGAAGGGGGTATACATTAACACTGCCCTGCTCAATGCATCCT 762 Query 1441 GTGCAGCCATGGATGACTTCCAACTGATTCCAATGATAAGCAAATGCAGAACAAAAGAAG 1500 ||||||| ||||| || || ||||| ||||| ||||||||||| |||||||| ||||| | Sbjct 761 GTGCAGCAATGGACGATTTTCAACTAATTCCCATGATAAGCAAGTGCAGAACTAAAGAGG 702 Query 1501 GAAGAAGGAAGACAAACCTGTATGGGTTCATTATAAAAGGAAGGTCCCATTTGAGAAATG 1560 |||| | || || || | ||||| ||||| ||||| ||||| || |||||||| |||| Sbjct 701 GAAGGCGAAAAACCAATTTATATGGATTCATCATAAAGGGAAGATCTCATTTGAGGAATG 642 Query 1561 ATACTGACGTGGTGAACTTTGTGAGTATGGAATTCTCCCTTACTGACCCAAGGCTGGAGC 1620 | || |||||||| || |||||||| ||||| || || || || ||||| || || || | Sbjct 641 ACACAGACGTGGTAAATTTTGTGAGCATGGAGTTTTCTCTCACAGACCCGAGACTTGAAC 582 Query 1621 CACACAAATGGGAAAAGTACTGTGTTCTTGAAGTAGGGGAAATGCTCTTGCGGACTGCAA 1680 |||| |||||||| || |||||||| ||||| |||| || ||| | | | | ||| | Sbjct 581 CACATAAATGGGAGAAATACTGTGTCCTTGAGATAGGAGATATGTTACTAAGAAGTGCCA 522 Query 1681 TAGGCCAGGTGTCAAGGCCCATGTTCCTGTATGTGAGAACTAACGGAACCTCCAAAATTA 1740 ||||||| | |||||||| |||||| |||||||||| || |||||||| || || | | Sbjct 521 TAGGCCAAATTTCAAGGCCGATGTTCTTGTATGTGAGGACAAACGGAACATCAAAGGTCA 462 Query 1741 AGATGAAATGGGGGATGGAAATGAGACGCTGCCTTCTTCAATCTCTTCAACAGATTGAGA 1800 | ||||||||||| ||||| |||||||| ||||| ||||| || || || ||||| |||| Sbjct 461 AAATGAAATGGGGAATGGAGATGAGACGTTGCCTCCTTCAGTCACTCCAGCAGATCGAGA 402 Query 1801 GCATGATCGAGGCTGAGTCTTCTATCAAAGAGAAAGACATGACCAAAGAATTCTTTGAAA 1860 ||||||| || || ||||| || | ||||||||||||||||||||||| || ||||| | Sbjct 401 GCATGATTGAAGCCGAGTCCTCAGTTAAAGAGAAAGACATGACCAAAGAGTTTTTTGAGA 342 Query 1861 ACAGATCGGAGACATGGCCAATTGGAGAGTCACCTAAGGGAGTGGAGGAAGGCTCAATCG 1920 | | ||| || ||||||| ||||| ||||| || ||||||||||| ||||| || || | Sbjct 341 ATAAATCAGAAGCATGGCCCATTGGGGAGTCCCCCAAGGGAGTGGAAGAAGGTTCCATTG 282 Query 1921 GGAAGGTGTGCAGAACCTTACTAGCAAAATCTGTGTTCAACAGCCTATATTCATCTCCAC 1980 |||| || || || || || | || || || || ||||| ||||| ||| |||| |||| Sbjct 281 GGAAAGTCTGTAGGACTCTATTGGCTAAGTCAGTATTCAATAGCCTGTATGCATCACCAC 222 Query 1981 AACTCGAAGGATTTTCAGCTGAATCGAGAAAACTACTACTCATTGTTCAAGCACTTAGGG 2040 || | |||||||||||||| || || |||||||| || || ||||||| || ||||||| Sbjct 221 AATTGGAAGGATTTTCAGCGGAGTCAAGAAAACTGCTCCTTGTTGTTCAGGCTCTTAGGG 162 Query 2041 ACAACCTGGNNNNNNNNNNNNTTGATCTTGAAGGGCTATATGGAGCAATTGAGGAGTGCC 2100 ||||||| | ||||||||| |||||||||| ||||||||||||||||| Sbjct 161 ACAACCTCGAACCTGGGACCTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAGTGCC 102 Query 2101 TGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACACATG 2160 ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| Sbjct 101 TGATTAATGATCCCTGGGTTTTGCTCAATGCGTCTTGGTTCAACTCCTTCCTGACACATG 42 Query 2161 CACTAAAATAGTTGTGGCAATGCTACTATTTGCTATCCATA 2201 || |||||||||| ||||| |||||||||||| ||||| || Sbjct 41 CATTAAAATAGTTATGGCAGTGCTACTATTTGTTATCCGTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6993905845430