Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_005831.2 Length=27553 Score E Sequences producing significant alignments: (Bits) Value seq96645 800 0.0 seq139329 567 1e-157 seq132367 123 4e-24 >seq96645 Length=1578 Score = 800 bits (886), Expect = 0.0 Identities = 1136/1586 (72%), Gaps = 24/1586 (2%) Strand=Plus/Minus Query 15172 TATGAAAATTCTACAATATTGCAAGCTGCTGGTTTATGTGTTGTTTGTGGTTCACAAACT 15231 |||||||| ||||| | ||||||||||||||| | |||||||||||||||||||||||| Sbjct 1574 TATGAAAAGTCTACTGTCTTGCAAGCTGCTGGTATGTGTGTTGTTTGTGGTTCACAAACT 1515 Query 15232 GTACTTCGTTGTGGTGATTGTCTGCGTAAGCCTATGTTGTGCACTAAATGCGCATATGAT 15291 || | ||||| || || ||| | | | ||| | | ||||| || ||||| || || Sbjct 1514 GTTTTACGTTGCGGAGACTGTTTAAGAAGACCTCTCCTATGCACGAAGTGCGCCTACGAC 1455 Query 15292 CATGTATTTGGTACCGACCACAAGTTTATTTTGGCTATAACACCGTATGTATGTAATGC- 15350 ||||| | ||||| | ||||| || ||| || |||| ||||||||||| |||| || Sbjct 1454 CATGTCATGGGTACAAAGCACAAATTCATTATGTCTATCACACCGTATGTGTGTA--GCT 1397 Query 15351 ATCA-GGTTGTGGTGTTAGTGATGTCAAAAAATTGTATCTTGGTGGTTTGAATTACTATT 15409 || | |||||| ||||| |||||| | |||||||| | | || ||| | || || |||| Sbjct 1396 ATAATGGTTGTACTGTTAATGATGTTACAAAATTGTTTTTGGGAGGTCTTAACTATTATT 1337 Query 15410 GTACAAATCATAAACCACAGTTGTCTTTTCCATTATGTTCAGCTGGTAATATATTTGGTT 15469 |||| | || |||||||| || || || || | ||| | ||||||| | |||||| Sbjct 1336 GTACTGAGCACAAACCACAATTATCATTCCCGCTCTGTGCTAATGGTAATGTGTTTGGTC 1277 Query 15470 TATATAAAAATTCAGCAACTGGTTCCTTAGATGTTGAAGTTTTTAATAGGCTTGCAACGT 15529 | || || | | |||| |||||| ||||||||| | ||| || | ||||| | Sbjct 1276 TGTACAAGAGTAGTGCAATTGGTTCTGAAGATGTTGATGATTTCAACAAACTTGCTGTTT 1217 Query 15530 CTGATTGGACTGATGTTAGGGACTATAAACTTGCTAATGATGTTAAAGATACACTTAGAC 15589 | || ||||| |||| ||| ||||||||||||||| | |||||||| | || | | Sbjct 1216 CAGACTGGACCAATGTAGAGGATTATAAACTTGCTAATAACGTTAAAGAATCTCTGAAAA 1157 Query 15590 TCTTTGCGGCTGAAACTATTAAAGCTAAAGAAGAGAGTGTTAAGTCTTCTTATGCTTTTG 15649 | || || ||||||||| | ||||| || || || |||||| || ||||||| || Sbjct 1156 TTTTCGCTGCTGAAACTGTGAAAGCAAAGGAGGAATCTGTTAAAGCTGAATATGCTTATG 1097 Query 15650 CAACTCTTAAAG-AGGTTGTTGGACCTAAAGAATTGCTTCTTAGTTGGGAAAGTGGTAAA 15708 | | | |||||| ||||||| |||||||| ||| | | || |||||| ||| Sbjct 1096 CCA-TATTAAAGGAGGTTGTCGGACCTAAGGAAGTTGTACTCCAATGGGAATCCTCTAAG 1038 Query 15709 GTTAAACCACCTTTGAATCGTAATTCTGTTTTCACTTGTTTTCAAATAAGTAAGGACTCA 15768 ||||||| || | || | |||||||||||||| |||||||| |||| ||||| | Sbjct 1037 ATTAAACCTCCACTTAACAGAAATTCTGTTTTCACATGTTTTCAGATAAACAAGGATACT 978 Query 15769 AAATTCCAAATAGGTGAGTTCATCTTTGAGAAGGTTGAATATGGTTCTGATACTGTTACG 15828 ||| | || ||||||| || | |||||| || ||||||||| |||| ||||| Sbjct 977 AAAATTCAGTTAGGTGAATTTGTGTTTGAGCAGTCAGAATATGGTAGTGATTCTGTTTAC 918 Query 15829 TATAAGTCTACTGTAACTACTAAGTTAGTTCCTGGTATGATTTTTGTCTTAACATCTCAC 15888 ||||| |||| ||||||||| | | || |||||||||||||| || |||||||| Sbjct 917 TATAAAAGTACTAGCACTACTAAGCTGGCACCGGGTATGATTTTTGTGTTGACATCTCAT 858 Query 15889 AAT----GTCCAACCTTTACGTGCACCAACTATTGCAAACCAAGAGAAGTATTCTAGCAT 15944 ||| ||||| ||| | | || | | | | |||||||||||||| || ||| Sbjct 857 AATGTGAGTCCA--CTTAAAGCTAAC--ATTTTAGTCAACCAAGAGAAGTACAATACCAT 802 Query 15945 TTATAAATTGCACCCTGCTTTTAATGTCAGTGATGCATATGCTAATTTGGTTCCATATTA 16004 | || | | ||| | ||||| | || || ||| | | ||||| || || || Sbjct 801 ATCCAAGCTCTATCCTACGTTTAACATAGCGGAAGCCTATACCACATTGGTGCCTTACTA 742 Query 16005 CCAACTTATTGGTAAACAAAAGATAACTACAATACAGGGTCCTCCTGGTAGTGGTAAGTC 16064 ||| | || ||||| ||||| | || || || || |||||||||||||||||||| || Sbjct 741 TCAAATGATCGGTAAGCAAAAATTTACAACTATCCAAGGTCCTCCTGGTAGTGGTAAATC 682 Query 16065 ACATTGTTCCATTGGACTTGGATTGTACTACCCAGGTGCGCGTATTGTTTTTGTTGCTTG 16124 ||||||| || || | || ||||| || || || | ||||||| || || Sbjct 681 ACATTGTGTTATAGGTTTGGGTTTGTATTATCCTCAAGCTAGAATTGTTTACACAGCATG 622 Query 16125 TGCCCATGCTGCTGTTGATTCCTTATGTGCAAAAGCT---ATGACTGTTTATAGCATTGA 16181 | | ||||| ||||| ||| | ||||||| ||||||| | || || || |||| Sbjct 621 TTCACATGCAGCTGTGGATGCTTTATGTGAAAAAGCTTCCAAGAACTTTAAT---GTTGA 565 Query 16182 TAAGTGTACTAGGATTATACCTGCAAGAGCTCGGGTTGAGTGTTATAGTGGCTTTAAACC 16241 ||| ||| | ||||| |||||| |||| | ||||| ||||||| || |||||||| Sbjct 564 TAAATGTTCAAGGATAATACCTCAAAGAATCAGAGTTGATTGTTATATGGGTTTTAAACC 505 Query 16242 AAATAACACTAGTGCACAATACATATTTAGCACTGTTAACGCATTACCTGAGTGTAATGC 16301 ||||| || | ||||||||| | ||| |||| ||||| || || ||||| ||| Sbjct 504 TAATAATACCAATGCACAATATTTGTTTTGCACAGTTAATGCTTTGCCTGAAGCTAACTG 445 Query 16302 TGATATCGTTGTTGTAGATGAAGTTTCAATGTGTACAAATTATGACCTTTCTGTTATTAA 16361 ||| || || ||||| |||||||| |||||||||||||| ||||| || |||||| || Sbjct 444 TGACATTGTGGTTGTGGATGAAGTGTCAATGTGTACAAACTATGATCTCAGTGTTATAAA 385 Query 16362 CCAGCGTTTATCATATAAACATATTGTTTATGTTGGTGATCCACAACAACTTCCTGCACC 16421 | | || ||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct 384 TAGTAGACTGAGCTACAAACATATTGTTTATGTAGGTGACCCACAACAACTTCCAGCACC 325 Query 16422 TAGAGTAATGATTACTAAAGGTGTTATGGAGCCTGTTGATTATAACGTTGTTACTCAACG 16481 |||| |||||| ||| ||| | |||||| || || || ||||| ||||| | Sbjct 324 TAGAACCTTGATTAATAAGGGTACACTCCAGCCTGAGGACTACAATGTTGTGACTCAGAG 265 Query 16482 TATGTGTGCTATAGGCCCTGATGTTTTTCTTCATAAATGTTATAGATGTCCTGCTGAAAT 16541 |||||| |||| |||||||| ||| | || |||||||| ||||| || |||||||| Sbjct 264 GATGTGTAAACTAGGACCTGATGTATTTTTGCACAAATGTTACAGATGCCCAGCTGAAAT 205 Query 16542 AGTTAATACAGTTTCTGAACTTGTTTATGAGAACAAGTTTGTCCCTGTTAAACCTGCTAG 16601 ||||| ||||| |||| |||||||||||||| || ||| | ||||| || |||| || Sbjct 204 TGTTAAAACAGTCTCTGCTCTTGTTTATGAGAATAAATTTTTACCTGTCAACCCTG--AG 147 Query 16602 T--AAACAGTGTTTTAAAGTCTTTTTTAAGGGTAATGTACAGGTTGACAATGGTTCTAGT 16659 | || ||||| ||||| | ||| | || || | || ||| |||| | ||| | Sbjct 146 TCAAAGCAGTGCTTTAAGATGTTTGTAAAAGGCCAAGTTCAGATTGAATCTAACTCTTCT 87 Query 16660 ATTAACAGAAAGCAGCTTGAAATAGTTAAGCTGTTTTTAGTTAAAAATCCAAGTTGGAGT 16719 || |||| ||||| || || | || ||| ||||||| | |||||||| ||| || Sbjct 86 ATAAACAACAAGCAACTAGAGGTTGTCAAGGCATTTTTAGCACATAATCCAAGATGGCGT 27 Query 16720 AAGGCTGTGTTTATTTCTCCTTATAA 16745 || ||||| || || || || ||||| Sbjct 26 AAAGCTGTTTTCATCTCACCCTATAA 1 >seq139329 Length=1076 Score = 567 bits (628), Expect = 1e-157 Identities = 773/1078 (72%), Gaps = 10/1078 (1%) Strand=Plus/Minus Query 14176 AAATTTTATGGTGGTTGGAATAATATGTTGCGTACTTTAATTGATGGTGTTGAAAACCCT 14235 ||||| |||||||| ||| | |||||| | | || || | ||| || || | Sbjct 1074 AAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATGGT 1015 Query 14236 ATGCTT-ATGGGTTGGGATTATCCCAAATGTGATAGAGCTTTGCCTAACATGATACGTAT 14294 || || ||||| ||||| ||||| || || || | ||||||||||| |||||||| || Sbjct 1014 -TGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAAT 956 Query 14295 GATTTCAGCCATGGTGTTGGGCTCTAAGCATGTTAATTGTTGTACTGCAACAGATAGGTT 14354 | ||| |||||||| ||||| |||||||| || ||||||||| | |||||||| Sbjct 955 GGCTTCTGCCATGGTATTGGGTTCTAAGCACATTGGTTGTTGTACACATAGTGATAGGTT 896 Query 14355 TTATAGGCTTGGTAATGAGTTGGCACAAGTTTTAACAGAAGTTGTTTATTCTAATGGTGG 14414 ||| | || ||||||||| || ||||| | ||||| ||||| ||| || ||||| Sbjct 895 CTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGGTGG 836 Query 14415 TTTTTATTTTAAGCCAGGTGGTACGACTTCTGGTGACGCTAGTACAGCTTATGCTAATTC 14474 |||||| | || || |||||||| ||| |||||||| || |||||| |||||||| || Sbjct 835 CTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAACTC 776 Query 14475 TATTTTTAACATTTTTCAAGCCGTGAGTTCTAACATTAACAGGTTGCTTAGT-GTCCCAT 14533 ||||||||| |||||||| || | |||| |||||| | | ||||| || | Sbjct 775 AGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCT-CTTAGGAGTTGATT 717 Query 14534 CAGATTCATGTAATAATGTTAATGTTAGGGATCTACAACGACGTCTGTATGATAATTGTT 14593 || | | ||||| ||||||| |||| || |||| || | ||||| ||||||| Sbjct 716 CAAACACCTGTAACAATGTTACAGTTAAGGCCATACAGCGCAAGATATATGACAATTGTT 657 Query 14594 A---TAGGTTAACTAGTGTTGAAGAGTCATTCATTGATGATTATTATGGTTATCTTAGGA 14650 | ||| || | ||||| || || || | | || |||| | ||||| | || | Sbjct 656 ACCGTAG--TAGC-AGTGTGGATGACGACTTTGTAGTCGAATATTTTAGTTATTTAAGAA 600 Query 14651 AACATTTTTCAATGATGATTCTCTCTGATGACGGTGTTGTCTGTTATAACAAGGATTATG 14710 | || || || ||||||||| | |||||||| ||||| || ||||| ||||| ||||||| Sbjct 599 AGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACAACAAAGATTATG 540 Query 14711 CTGAGTTAGGTTATATAGCAGACATTAGTGCTTTTAAAGCCACTTTGTATTACCAGAATA 14770 |||| | |||||| ||||||||||| |||||||||| |||||| | ||||| ||||| | Sbjct 539 CTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTATATTATCAGAACA 480 Query 14771 ATGTCTTTATGAGTACTTCTAAATGTTGGGTTGAAGAAGATTTAACTAAGGGACCACATG 14830 |||| |||||| ||| |||| |||||||| ||| |||| | | | ||||||||| | Sbjct 479 ATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATGTGGGACCACACG 420 Query 14831 AGTTTTGTTCCCAGCATACTATGCAAATAGTTGACAAAGATGGTACCTATTATTTGCCTT 14890 | |||||||| || || || | ||||| || | ||||||| ||||||||| |||| Sbjct 419 AATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACTATTATTTACCTT 360 Query 14891 ACCCAGATCCTAGTAGGATCTTGTCAGCTGGNNNNNNNNNNNNNNNNNNNNNNAAGACAG 14950 | ||||| || ||| || |||||||| || ||||||| Sbjct 359 ATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATGACATTGTTAAGACAG 300 Query 14951 ATGCTGTTGTTTTGTTAGAACGTTATGTGTCTTTAGCTATTGATGCATACCCTCTTTCAA 15010 | ||| | || | |||||||||||||| |||| ||||||||||| || || ||| Sbjct 299 ACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATGCATATCCACTCACAA 240 Query 15011 AACACCCTAATTCCGAATATCGTAAGGTTTTTTACGTATTACTTGATTGGGTTAAGCATC 15070 |||||||||| | | ||| | || || || || | ||| ||||| |||||||| || | Sbjct 239 AACACCCTAAACCTGCATACCAAAAAGTATTCTATGCATTGCTTGACTGGGTTAAACACC 180 Query 15071 TTAACAAAAATTTGAATGAGGGTGTTCTTGAATCTTTTTCTGTTACACTTCTTGATAATC 15130 | | || | | | |||| ||| | ||||| || || ||||| || | | || || Sbjct 179 TACAGAAGACTCTAAATGCTGGTATACTTGATTCCTTCTCTGTCACTATGTTAGAGGATG 120 Query 15131 AAGAAGATAAGTTTTGGTGTGAAGATTTTTATGCTAGTATGTATGAAAATTCTACAATAT 15190 ||||||| |||||| |||| || || || || ||| | || || || ||||| | | Sbjct 119 GTCAAGATAAATTTTGGAGTGAGGAGTTCTACGCCAGTCTTTACGAGAAGTCTACTGTTT 60 Query 15191 TGCAAGCTGCTGGTTTATGTGTTGTTTGTGGTTCACAAACTGTACTTCGTTGTGGTGA 15248 ||||||||||||| | |||||||||||||||||||||||||| | ||||| || || Sbjct 59 TGCAAGCTGCTGGCATGTGTGTTGTTTGTGGTTCACAAACTGTGTTACGTTGCGGAGA 2 >seq132367 Length=1893 Score = 123 bits (136), Expect = 4e-24 Identities = 140/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 23755 TTAATGAATGTGTCAAGTCACAATCTAATAGATATGGTTTTTGTGGCAATGGCACTCACA 23814 |||||||||| || || |||||||| |||| |||||||||||||| ||||| || ||| Sbjct 73 TTAATGAATGCGTGAAATCACAATCGGATAGGTATGGTTTTTGTGGAAATGGAACACACC 132 Query 23815 TCTTTTCAATCGTCAACTCAGCTCCAGATGGTTTGCTTTTTCTTCATACTGTTTTGCTGC 23874 | || ||| | ||||| || || || ||||||||||| || |||| || ||| |||| | Sbjct 133 TGTTCTCACTTGTCAATTCTGCACCTGATGGTTTGCTCTTCTTTCACACAGTTCTGCTTC 192 Query 23875 CAACTG-ATTACAAGAATGTAAAGGCGTGGTCTGGTATCTGTGTTGATGGCATTTATGGC 23933 | || | || ||||| || | || ||||| ||||| |||||| ||| | |||| Sbjct 193 CTACCGAATGGGAAGAA-GTGACTGCATGGTCAGGTATATGTGTTAATGATACCTATGCA 251 Query 23934 TATGT 23938 ||||| Sbjct 252 TATGT 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 87814844851740