Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_006577.2 Length=29926 Score E Sequences producing significant alignments: (Bits) Value seq139329 230 4e-56 seq96645 86.0 1e-12 >seq139329 Length=1076 Score = 230 bits (254), Expect = 4e-56 Identities = 564/847 (67%), Gaps = 36/847 (4%) Strand=Plus/Minus Query 15338 CTAAATTTTATGGTGGTTGGGACGATATGTTACGTCATCTTATAAAGGATGTTGACAACC 15397 ||||||| |||||||| |||||| ||||| || | | || ||||| || || Sbjct 1076 CTAAATTCTATGGTGGCTGGGACAATATGCTAAAGAACTTGATGCGCGATGTGGATAATG 1017 Query 15398 CTGTTCTTATGGGTTGGGATTATCCTAAATGTGATCGTGCTATGCCAAATATTTTGCGTA 15457 | | | ||||| ||||| ||||| || || || |||||| |||| ||||| | || | Sbjct 1016 GTTGTTTGATGGGATGGGACTATCCAAAGTGCGACCGTGCTTTGCCTAATATGATACGAA 957 Query 15458 TTGTTAGTAGTTTAGTTTTGGCCCGCAAACATGAATT--TTGTTGTTCACATGGTGATAG 15515 | | | | | || |||| || || ||| ||||||| ||||| ||||||| Sbjct 956 TGGCTTCTGCCATGGTATTGGGTTCTAAGCAC--ATTGGTTGTTGTACACATAGTGATAG 899 Query 15516 ATTTTATCGCCTTGCGAATGAATGTGCTCAAGTTTTGAGTGAAATAGTTATGTGTGGCGG 15575 || ||||| || | ||||| | |||||||| | | || | || ||| || Sbjct 898 GTTCTATCGACTCTCTAATGAGTTAGCTCAAGTACTCACAGAGGTTGTACATTGTACAGG 839 Query 15576 TTGCTATTATGTTAAGCCTGGTGGTACTAGCAGTGGTGATGCAACTACTGCTTTTGCTAA 15635 | ||| |||| | || ||||||||||| | |||||||| | ||||| || | |||||| Sbjct 838 TGGCTTTTATATAAAACCTGGTGGTACAACTAGTGGTGACGGTACTACAGCGTATGCTAA 779 Query 15636 TTCTGTTTTTAATATATGTCAGGCTGTTACTGCTAATGTTTGTT--CTCTTATGGCCTGT 15693 || | |||||| || | ||| |||||| ||||||||||| |||||| | || Sbjct 778 CTCAGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAACAAGCTCTTAGGAGTTGA 719 Query 15694 ----AATGGCCATAAGATTGAAGATTTAAGTATACGCAATTTA---CAAAAACGCTTATA 15746 || | ||| | || || ||| | || || | ||| | |||| Sbjct 718 TTCAAACACCTGTAACAATG----TTACAGTTAAGGCCATACAGCGCAAGA-----TATA 668 Query 15747 CTCTAATGTTTATCGTA----CAGATTATGTTGATTATACATTTGTTAATGAGTATTATG 15802 ||| ||| |||| ||| ||| ||| | ||||| || |||| | Sbjct 667 TGACAATTGTTACCGTAGTAGCAG----TGTGGATGACGACTTTGTAGTCGAATATTTTA 612 Query 15803 AATTTTTATGTAAGCATTTTAGTATGATGATTTTGAGTGATGATGGTGTTGTCTGTTATA 15862 | |||| | ||||| || ||||||||||||| |||||||||||| || ||||| | Sbjct 611 GTTATTTAAGAAAGCACTTCTCTATGATGATTTTGTCTGATGATGGTGTAGTTTGTTACA 552 Query 15863 ACTCTGATTATGCTAGTAAGGGTTATATAGCTAATATAAGTGTTTTTCAACAAGTTTTGT 15922 || ||||||||| | |||||| |||| | || ||| |||| | | | | Sbjct 551 ACAAAGATTATGCTGATCTTGGTTATGTAGCAGACATTGGTGCTTTTAAGGCCACTCTAT 492 Query 15923 ACTATCAGAATAATGTCTTTATGTCTGAATCTAAATGTTGGGTTGAAAATGATATTACTA 15982 | |||||||| ||||| ||||||||| | |||| |||||||| ||| ||| ||| | Sbjct 491 ATTATCAGAACAATGTGTTTATGTCTACAGCTAAGTGTTGGGTAGAACCAGATCTTAATG 432 Query 15983 ATGGTCCTCATGAATTTTGTTCCCAACATACTATGTTAGT--TAAGA-TAGATGGTGATT 16039 || || || ||||||||||| ||||| || | | | || || ||||||||| | Sbjct 431 TGGGACCACACGAATTTTGTTCACAACACACATTACAAATTGTAGGACCAGATGGTGACT 372 Query 16040 ATGTTTATTTACCATATCCAGATCCTTCTAGAATTTTAGGAGCTGGTTGTTTTGTTGATG 16099 | ||||||||| |||||||| || ||||||||||| ||| ||| ||||||||||| Sbjct 371 A---TTATTTACCTTATCCAGACCCATCTAGAATTTTGTCAGCAGGTGTTTTTGTTGATG 315 Query 16100 ATTTATTGAAGACTGACAGTGTTCTTTTGATAGAGCGCTTTGTAAGTCTAGCTATAGATG 16159 | | | ||||| |||| ||| | || | || || | ||| ||||| || |||| Sbjct 314 ACATTGTTAAGACAGACAACGTTATCATGCTTGAACGTTATGTGTCGCTAGCAATTGATG 255 Query 16160 CTTACCC 16166 | || || Sbjct 254 CATATCC 248 >seq96645 Length=1578 Score = 86.0 bits (94), Expect = 1e-12 Identities = 353/552 (64%), Gaps = 12/552 (2%) Strand=Plus/Minus Query 17191 ACTGTTCAAGGTCCCCCTGGTACGGGAAAGTCTCATCTTGCTATAGGTCTAGCTGTTTAT 17250 ||| | |||||||| ||||||| || || || ||| || ||||||| | | | | ||| Sbjct 713 ACTATCCAAGGTCCTCCTGGTAGTGGTAAATCACATTGTGTTATAGGTTTGGGTTTGTAT 654 Query 17251 TACTACACA-GCACGTGTAGTTTATACTGCTGCTAGTCATGCTGCTGTAGATGCATTGTG 17309 || | | || || | | ||||| || || | ||||| ||||| ||||| || || Sbjct 653 TA-TCCTCAAGCTAGAATTGTTTACACAGCATGTTCACATGCAGCTGTGGATGCTTTATG 595 Query 17310 TGAAAAAGCTTATAAGTTTTTAAATATTAACGATTGTACACGTATTATTCCTGCTAAAGT 17369 ||||||||||| ||| || ||| || | | ||| || | || || ||| | | | Sbjct 594 TGAAAAAGCTTCCAAGAACTTTAATGTTGATAAATGTTCAAGGATAATACCTCAAAGAAT 535 Query 17370 TCGTGTAGATTGTTATGATAAG-TTTAAAATTAATGATACCACTTGTAAGTATGTTTTTA 17428 | || ||||||||| || | |||||| |||| |||||| | | ||| | ||| Sbjct 534 CAGAGTTGATTGTTAT-ATGGGTTTTAAACCTAATAATACCAATGCACAATATTTGTTTT 476 Query 17429 CCACAATAAATGCATTACCAGAGTTGGTTAC--AGATATTGNNNNNNNNNNNNNAGTTAG 17486 |||| | ||||| || || || | | || || |||| ||| Sbjct 475 GCACAGTTAATGCTTTGCCTGA--AGCTAACTGTGACATTGTGGTTGTGGATGAAGTGTC 418 Query 17487 TATGCTTACTAATTATGAATTGTCTGTTATAAATGCTCGTATTAAAGCT--AAACATTAT 17544 ||| ||| || ||||| | |||||||||| | | | |||| |||||| | Sbjct 417 AATGTGTACAAACTATGATCTCAGTGTTATAAATAGTAGACT--GAGCTACAAACATATT 360 Query 17545 GTATATATTGGAGATCCTGCTCAATTACCTGCACCACGTGTGCTGTTGAGCAAGGGTTCT 17604 || ||| | || || || ||| | || ||||| | || | | |||||| | Sbjct 359 GTTTATGTAGGTGACCCACAACAACTTCCAGCACCTAGAACCTTGATTAATAAGGGTACA 300 Query 17605 TTAGAACCTAGGCACTTCAATTCTATTACTAAAATAATGTGTTGTTTAGGTCCTGATATC 17664 | | ||| | ||| |||| | | ||| | | |||||| |||| |||||| | Sbjct 299 CTCCAGCCTGAGGACTACAATGTTGTGACTCAGAGGATGTGTAAACTAGGACCTGATGTA 240 Query 17665 TTTTTGGGAAATTGTTATAGGTGTCCTAAAGAAATTGTAGAAACTGTTTCAGCATTGGTT 17724 |||||| || ||||| || || || |||||||| |||| || || || | ||| Sbjct 239 TTTTTGCACAAATGTTACAGATGCCCAGCTGAAATTGTTAAAACAGTCTCTGCTCTTGTT 180 Query 17725 TATGATAATAAA 17736 ||||| |||||| Sbjct 179 TATGAGAATAAA 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95377931351680