Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007358.1 Length=2341 Score E Sequences producing significant alignments: (Bits) Value seq205407 2293 0.0 >seq205407 Length=1958 Score = 2293 bits (2542), Expect = 0.0 Identities = 1682/1956 (86%), Gaps = 0/1956 (0%) Strand=Plus/Plus Query 385 AAGCTGACCCAAGGTCGCCAAACCTATGACTGGACATTGAAAAGAAACCAGCCGGCTGCA 444 || || ||||||||||||||||| ||||| |||||||| || ||||| || ||||| ||| Sbjct 3 AAACTAACCCAAGGTCGCCAAACTTATGATTGGACATTAAACAGAAATCAACCGGCAGCA 62 Query 445 ACCGCTTTGGCCAACACTATAGAGGTCTTCAGATCGAATGGTCTAACAGCCAATGAATCG 504 || || || |||||||| ||||| ||||| |||||||| || ||||||| |||||||| Sbjct 63 ACTGCATTAGCCAACACCATAGAAGTCTTTAGATCGAACGGATTAACAGCTAATGAATCA 122 Query 505 GGAAGGCTAATAGATTTCCTCAAAGACGTGATGGAATCAATGGATAAGGGAGAAATGGAA 564 ||||||||||||||||||||||| || |||||||||||||||||||| | |||||||| Sbjct 123 GGAAGGCTAATAGATTTCCTCAAGGATGTGATGGAATCAATGGATAAAGAGGAAATGGAG 182 Query 565 ATAATAACACATTTCCAGAGAAAGAGAAGAGTGAGGGACAACATGACCAAGAAAATGGTC 624 |||| |||||| || || ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 183 ATAACAACACACTTTCAAAGAAAAAGGAGAGTAAGGGACAACATGACCAAGAAAATGGTC 242 Query 625 ACACAAAGAACAATAGGGAAGAAAAAACAAAGGCTGAACAAAAGGAGCTACCTAATAAGA 684 |||||||||||||||||||||||||| ||||| |||| || || |||||||||||||| Sbjct 243 ACACAAAGAACAATAGGGAAGAAAAAGCAAAGAGTGAATAAGAGAGGCTACCTAATAAGA 302 Query 685 GCACTGACACTGAACACAATGACAAAAGACGCAGAAAGAGGCAAATTGAAGAGGCGGGCA 744 || ||||| ||||||| ||||| ||||| ||||| ||||||||||| || || |||| Sbjct 303 GCTTTGACATTGAACACGATGACCAAAGATGCAGAGAGAGGCAAATTAAAAAGAAGGGCT 362 Query 745 ATTGCAACACCCGGGATGCAAATCAGAGGATTCGTGTACTTTGTCGAAACACTAGCGAGG 804 ||||||||||||||||||||||| ||||| ||||||||||| || ||||| |||| || Sbjct 363 ATTGCAACACCCGGGATGCAAATTAGAGGGTTCGTGTACTTCGTTGAAACTTTAGCTAGA 422 Query 805 AGTATCTGTGAGAAACTTGAGCAATCTGGACTCCCCGTCGGAGGGAATGAAAAGAAGGCT 864 || || || || || ||||| ||||||||||| || || || || |||||||||||||| Sbjct 423 AGCATTTGCGAAAAGCTTGAACAATCTGGACTTCCGGTTGGGGGTAATGAAAAGAAGGCC 482 Query 865 AAATTGGCAAATGTCGTGAGGAAGATGATGACTAACTCACAAGATACAGAGCTCTCTTTT 924 ||| |||||||||| ||||| || ||||||||||| |||||||| |||||||| ||||| Sbjct 483 AAACTGGCAAATGTTGTGAGAAAAATGATGACTAATTCACAAGACACAGAGCTTTCTTTC 542 Query 925 ACAATTACTGGAGACAACACCAAATGGAATGAGAATCAGAACCCTCGGATGTTTCTAGCA 984 ||||| ||||| |||||||| || |||||||| ||||| ||||| || |||||| | || Sbjct 543 ACAATCACTGGGGACAACACTAAGTGGAATGAAAATCAAAACCCCCGAATGTTTTTGGCG 602 Query 985 ATGATAACATACATCACAAGGAACCAACCTGAATGGTTTAGAAATGTCTTAAGCATTGCT 1044 ||||| ||||||||||||| ||| |||||||||||||| ||||| || | ||||| || Sbjct 603 ATGATTACATACATCACAAAGAATCAACCTGAATGGTTCAGAAACATCCTGAGCATCGCA 662 Query 1045 CCTATAATGTTCTCAAACAAGATGGCAAGATTAGGGAAAGGATACATGTTCGAAAGTAAG 1104 || ||||||||||||||||| ||||||||| | || ||||||||||||||||| |||||| Sbjct 663 CCAATAATGTTCTCAAACAAAATGGCAAGACTGGGAAAAGGATACATGTTCGAGAGTAAG 722 Query 1105 AGCATGAAGCTACGGACACAAATACCAGCAGAAATGCTTGCAAGCATTGACTTGAAATAC 1164 || |||||||| |||||||||||||| ||||||||||| |||||||||||| |||| || Sbjct 723 AGAATGAAGCTCCGGACACAAATACCTGCAGAAATGCTAGCAAGCATTGACCTGAAGTAT 782 Query 1165 TTCAACGAATCAACGAGAAAGAAAATCGAGAAAATAAGACCTCTACTAATAGATGGCACA 1224 ||||| |||||||| || |||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 783 TTCAATGAATCAACAAGGAAGAAAATTGAGAAAATAAGGCCTCTTCTAATAGATGGCACA 842 Query 1225 GCCTCATTGAGTCCTGGAATGATGATGGGCATGTTCAATATGCTGAGTACAGTCTTAGGA 1284 || |||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 843 GCATCATTGAGCCCTGGAATGATGATGGGCATGTTCAACATGCTAAGTACAGTTTTAGGA 902 Query 1285 GTTTCAATCCTGAATCTTGGGCAGAAGAGGTACACCAAAACCACATACTGGTGGGACGGA 1344 || || || ||||||||||| || |||| |||||||| || |||||||||||||| || Sbjct 903 GTCTCGATACTGAATCTTGGACAAAAGAAATACACCAAGACAACATACTGGTGGGATGGG 962 Query 1345 CTCCAATCCTCTGATGATTTCGCTCTCATAGTGAATGCACCAAATCATGAGGGAATAGAA 1404 ||||||||||| || ||||| || ||||||||||||||||||||||||||||||||| || Sbjct 963 CTCCAATCCTCAGACGATTTTGCCCTCATAGTGAATGCACCAAATCATGAGGGAATACAA 1022 Query 1405 GCAGGGGTGGATAGGTTCTATAGGACTTGCAAACTAGTTGGAATCAATATGACCAAGAAG 1464 ||||| |||||||| ||||| ||||| ||||| |||| |||||||| |||| ||| ||| Sbjct 1023 GCAGGAGTGGATAGATTCTACAGGACCTGCAAGTTAGTGGGAATCAACATGAGCAAAAAG 1082 Query 1465 AAGTCTTACATAAATCGGACAGGAACATGTGAATTCACAAGCTTCTTCTACCGCTATGGG 1524 ||||| || |||||| ||||| |||| ||||||||| ||||| || || || ||||| Sbjct 1083 AAGTCCTATATAAATAAAACAGGGACATTTGAATTCACTAGCTTTTTTTATCGATATGGA 1142 Query 1525 TTCGTAGCCAACTTCAGTATGGAGCTGCCCAGCTTTGGAGTGTCTGGGATTAATGAATCG 1584 || || || || || || ||||||||||| || |||||||||||||| || || || || Sbjct 1143 TTTGTGGCTAATTTTAGCATGGAGCTGCCAAGTTTTGGAGTGTCTGGAATAAACGAGTCA 1202 Query 1585 GCTGACATGAGCATTGGTGTTACAGTGATAAAGAACAATATGATGGACAACGACCTTGGA 1644 ||||||||||||||||| || ||||||||||||||||| ||||| |||| ||||||||| Sbjct 1203 GCTGACATGAGCATTGGAGTAACAGTGATAAAGAACAACATGATAAACAATGACCTTGGA 1262 Query 1645 CCAGCAACAGCTCAGATGGCTCTTCAGCTATTCATTAAGGACTACAGATACCCATACCGA 1704 ||||||||||| || |||||||| || | ||||| || || ||||||||| |||| || Sbjct 1263 CCAGCAACAGCCCAAATGGCTCTCCAATTGTTCATCAAAGATTACAGATACACATATCGG 1322 Query 1705 TGCCACAGGGGGGATACACAAATCCAAACGAGGAGATCATTCGAGCTGAAGAAGCTGTGG 1764 ||||| || || || ||||||||||||||||| |||||||||||| | |||||||||||| Sbjct 1323 TGCCATAGAGGAGACACACAAATCCAAACGAGAAGATCATTCGAGATAAAGAAGCTGTGG 1382 Query 1765 GAGCAGACCCGCTCAAAGGCAGGACTGTTGGTTTCAGATGGAGGACCAAACCCATACAAT 1824 || || |||| |||| | ||||||| ||||| |||||||| ||||||||| ||||||| Sbjct 1383 GATCAAACCCAATCAAGGACAGGACTATTGGTATCAGATGGGGGACCAAACTTATACAAT 1442 Query 1825 ATCCGGAATCTCCACATTCCGGAGGCTGGCTTGAAGTGGGAATTGATGGATGAAGACTAC 1884 ||||||||||| ||||| || || | |||| |||||||| |||||||||| | || Sbjct 1443 ATCCGGAATCTTCACATCCCTGAAGTCTGCTTAAAGTGGGAGCTGATGGATGAGAATTAT 1502 Query 1885 CAGGGCAGACTGTGTAATCCTCTGAACCCGTTTGTTAGTCATAAGGAAATTGAGTCTGTC 1944 | ||| ||||| |||||||| ||||| || ||||| || ||||| |||||||||||||| Sbjct 1503 CGGGGAAGACTTTGTAATCCCCTGAATCCCTTTGTCAGCCATAAAGAAATTGAGTCTGTA 1562 Query 1945 AACAATGCTGTGGTAATGCCAGCTCATGGCCCAGCCAAGAGCATGGAATATGATGCAGTT 2004 ||||||||||| ||||||||||| ||||| || ||||| || |||||||||||||| ||| Sbjct 1563 AACAATGCTGTAGTAATGCCAGCCCATGGTCCGGCCAAAAGTATGGAATATGATGCCGTT 1622 Query 2005 GCGACTACACATTCATGGATTCCCAAGAGGAATCGTTCCATTCTCAACACCAGCCAAAGG 2064 || |||||||| || ||||||||||| ||||| || || ||||| ||||| ||||||||| Sbjct 1623 GCAACTACACACTCCTGGATTCCCAAAAGGAACCGCTCTATTCTAAACACAAGCCAAAGG 1682 Query 2065 GGGATTCTTGAGGATGAACAGATGTATCAGAAGTGCTGCAATCTATTCGAGAAATTCTTC 2124 || ||||||||||||||||||||||| |||||||||||||| | ||||||||||| ||| Sbjct 1683 GGAATTCTTGAGGATGAACAGATGTACCAGAAGTGCTGCAACTTGTTCGAGAAATTTTTC 1742 Query 2125 CCTAGCAGTTCATATCGGAGGCCAGTTGGAATTTCCAGCATGGTGGAGGCCATGGTGTCT 2184 ||||| ||||||||| |||| || |||||||||| |||||||||||||||||||||||| Sbjct 1743 CCTAGTAGTTCATATAGGAGACCGATTGGAATTTCTAGCATGGTGGAGGCCATGGTGTCT 1802 Query 2185 AGGGCCCGAATTGATGCACGAATTGACTTCGAGTCTGGAAGGATTAAGAAAGAAGAGTTT 2244 |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1803 AGGGCCCGGATTGATGCCAGAATTGACTTCGAGTCTGGAAGGATTAAGAAGGAAGAGTTC 1862 Query 2245 GCTGAGATCATGAAGATCTGTTCCACCATTGAAGAGCTCGGACGGCAAAAATAGTGAATT 2304 |||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| Sbjct 1863 TCTGAGATCATGAAGATCTGTTCCACCATTGAAGAACTCAGACGGCAAAAATAATGAATT 1922 Query 2305 TAGCTTGTCCTTCATGAAAAAATGCCTTGTTTCTAC 2340 |||||||||||||||||||||||||||||||||||| Sbjct 1923 TAGCTTGTCCTTCATGAAAAAATGCCTTGTTTCTAC 1958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7364190226110