Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007359.1 Length=2233 Score E Sequences producing significant alignments: (Bits) Value seq208890 2251 0.0 >seq208890 Length=2206 Score = 2251 bits (2496), Expect = 0.0 Identities = 1820/2205 (83%), Gaps = 0/2205 (0%) Strand=Plus/Minus Query 1 AGCAAAAGCAGGTACTGATCCAAAATGGAAGACTTTGTGCGACAATGCTTCAATCCAATG 60 ||||||||||||||||||| | |||||||||| |||||||||||||||||||| || ||| Sbjct 2205 AGCAAAAGCAGGTACTGATTCGAAATGGAAGATTTTGTGCGACAATGCTTCAACCCGATG 2146 Query 61 ATTGTCGAGCTTGCGGAAAAGGCAATGAAAGAATATGGGGAAGATCCGAAAATCGAAACG 120 |||||||| ||||| ||||| ||||||||||| |||||||| |||| |||||| ||||| Sbjct 2145 ATTGTCGAACTTGCAGAAAAAGCAATGAAAGAGTATGGGGAGGATCTGAAAATTGAAACC 2086 Query 121 AACAAATTTGCCGCAATATGCACGCACTTAGAAGTCTGTTTCATGTATTCAGATTTCCAC 180 ||||||||||| |||||||| || ||||| || || ||||||||||||||||||||||| Sbjct 2085 AACAAATTTGCAGCAATATGTACTCACTTGGAGGTGTGTTTCATGTATTCAGATTTCCAT 2026 Query 181 TTTATTGATGAACGGGGCGAATCAACAATTATAGAATCTGGCGATCCCAATGCATTATTG 240 || || |||||| |||||||||| | | ||||| || |||||| |||||| | | Sbjct 2025 TTCATCAATGAACAAGGCGAATCAATAGTGGTAGAACTTGACGATCCAAATGCACTGCTA 1966 Query 241 AAACACCGGTTTGAAATAATCGAAGGGAGGGACCGAACAATGGCCTGGACAGTGGTGAAT 300 || ||| | |||||||||||||| ||||| ||| ||||||||||||||||||| || || Sbjct 1965 AAGCACAGATTTGAAATAATCGAGGGGAGAGACAGAACAATGGCCTGGACAGTAGTAAAC 1906 Query 301 AGTATCTGCAACACCACAGGAGTTGAGAAGCCTAAATTTCTCCCAGATTTGTATGACTAC 360 |||||||||||||| || |||| || || || || ||||| || ||||||||||| ||| Sbjct 1905 AGTATCTGCAACACTACTGGAGCTGGAAAACCGAAGTTTCTACCGGATTTGTATGATTAC 1846 Query 361 AAGGAGAACCGATTTATTGAAATTGGAGTGACACGGAGGGAAGTTCACACATACTATCTA 420 || |||||| |||| || ||||||||||||||| |||| ||||| |||| ||| || || Sbjct 1845 AAAGAGAACAGATTCATCGAAATTGGAGTGACAAGGAGAGAAGTCCACATATATTACCTT 1786 Query 421 GAAAAAGCCAACAAGATAAAATCTGAGAAGACACACATTCACATATTCTCATTCACTGGA 480 ||||| ||||| ||||| ||||||||||| |||||||||||||| || ||||||||||| Sbjct 1785 GAAAAGGCCAATAAGATTAAATCTGAGAACACACACATTCACATTTTTTCATTCACTGGG 1726 Query 481 GAGGAAATGGCCACCAAAGCGGACTACACCCTTGATGAAGAAAGCAGGGCCCGAATCAAA 540 |||||||||||||| || || |||||||| || || || ||||||||||| | || ||| Sbjct 1725 GAGGAAATGGCCACAAAGGCAGACTACACTCTCGACGAGGAAAGCAGGGCTAGGATTAAA 1666 Query 541 ACCAGGCTGTTCACTATAAGGCAGGAAATGGCCAGTAGGGGTTTATGGGATTCCTTTCGT 600 ||||||||||| || ||||| || |||||||||| || || | ||||||||||||||| Sbjct 1665 ACCAGGCTGTTTACCATAAGACAAGAAATGGCCAACAGAGGCCTCTGGGATTCCTTTCGT 1606 Query 601 CAGTCCGAGAGAGGCGAAGAGACAGTTGAAGAAAGATTTGAAATCACAGGGACTATGTGC 660 |||||||| ||||||||||| ||| ||||||||| ||||||||||||||| |||||| || Sbjct 1605 CAGTCCGAAAGAGGCGAAGAAACAATTGAAGAAAAATTTGAAATCACAGGAACTATGCGC 1546 Query 661 AGGCTTGCCGACCAAAGTCTCCCACCTAATTTCTCCAGCCTTGAAAAATTTAGAGCCTAT 720 |||||||||||||||||||||||||| || |||||| ||||||| || |||||||||||| Sbjct 1545 AGGCTTGCCGACCAAAGTCTCCCACCGAACTTCTCCTGCCTTGAGAATTTTAGAGCCTAT 1486 Query 721 GTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCGAAAGAA 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1485 GTGGATGGATTCGAACCGAACGGCTGCATTGAGGGCAAGCTTTCTCAAATGTCCAAAGAA 1426 Query 781 GTAAACGCCAGAATTGAGCCATTTCTGAAGACAACACCACGCCCTCTTAGATTACCTGAT 840 || || ||| |||||| || |||||||||||||||||| | || | | | | ||| || Sbjct 1425 GTGAATGCCCAAATTGAACCTTTTCTGAAGACAACACCAAGACCAATCAAACTTCCTAAT 1366 Query 841 GGGCCTCCCTGCTCTCAGCGGTCGAAGTTTTTGCTGATGGATGCCCTTAAATTAAGCATC 900 || ||||| || | ||||||||| || || | ||||||||||| | ||||| ||||| Sbjct 1365 GGACCTCCTTGTTATCAGCGGTCCAAATTCCTCCTGATGGATGCTTTGAAATTGAGCATT 1306 Query 901 GAAGACCCGAGTCATGAGGGGGAGGGGATACCGCTATATGATGCAATCAAATGCATGAAA 960 |||||||| ||||| || || || ||||| || |||||||||| ||||| ||||| ||| Sbjct 1305 GAAGACCCAAGTCACGAAGGAGAAGGGATCCCATTATATGATGCGATCAAGTGCATAAAA 1246 Query 961 ACATTTTTCGGCTGGAAAGAGCCCAACATTGTAAAACCACATGAAAAAGGCATAAACCCC 1020 ||||| || || |||||||| || | || || |||||||| ||||| || ||||| | Sbjct 1245 ACATTCTTTGGATGGAAAGAACCTTATATAGTCAAACCACACGAAAAGGGAATAAATTCA 1186 Query 1021 AATTACCTCCTGGCTTGGAAGCAGGTGCTGGCAGAGCTCCAAGATATTGAAAACGAGGAG 1080 |||||||| ||| | |||||||| || ||| |||| | || || |||||||| |||||| Sbjct 1185 AATTACCTGCTGTCATGGAAGCAAGTACTGTCAGAATTGCAGGACATTGAAAATGAGGAG 1126 Query 1081 AAAATTCCAAAGACAAAGAACATGAGGAAAACAAGCCAATTGAAGTGGGCACTTGGTGAG 1140 || ||||||| || || ||||||| |||||| || ||| |||||||||| |||||||| Sbjct 1125 AAGATTCCAAGAACTAAAAACATGAAGAAAACGAGTCAACTGAAGTGGGCTCTTGGTGAA 1066 Query 1141 AATATGGCACCAGAGAAAGTAGACTTTGAGGATTGCAAAGATGTTAGCGATCTAAGGCAG 1200 || |||||||||||||| ||||||||||| | |||| ||| | |||||| | | ||| Sbjct 1065 AACATGGCACCAGAGAAGGTAGACTTTGAAAACTGCAGAGACATAAGCGATTTGAAGCAA 1006 Query 1201 TATGACAGTGATGAACCAAAGCCTAGATCACTAGCAAGCTGGATCCAGAGTGAATTCAAC 1260 ||||| ||||| ||||| | || ||||| |||||||||| |||||||| |||||| Sbjct 1005 TATGATAGTGAAGAACCTGAATTAAGGTCACTTTCAAGCTGGATACAGAGTGAGTTCAAC 946 Query 1261 AAGGCATGCGAATTGACAGATTCAAGTTGGATTGAACTTGATGAAATAGGGGAAGACGTT 1320 ||||| || || | || |||||| ||||| || || |||||||| || || ||||| Sbjct 945 AAGGCCTGTGAGCTAACTGATTCAGTCTGGATAGAGCTCGATGAAATTGGAGAGGACGTA 886 Query 1321 GCTCCAATTGAGCACATTGCAAGTATGAGAAGGAACTATTTCACAGCGGAAGTATCCCAT 1380 || |||||||||||||||||||| ||||||||||| ||||||||||| || || |||||| Sbjct 885 GCCCCAATTGAGCACATTGCAAGCATGAGAAGGAATTATTTCACAGCAGAGGTGTCCCAT 826 Query 1381 TGCAGGGCTACTGAATACATAATGAAGGGAGTGTACATAAACACAGCTTTGTTGAATGCA 1440 || || ||||||||||||||||||||||| || ||||| ||||| || || | |||||| Sbjct 825 TGTAGAGCTACTGAATACATAATGAAGGGGGTATACATTAACACTGCCCTGCTCAATGCA 766 Query 1441 TCCTGTGCAGCCATGGATGACTTCCAACTGATCCCAATGATAAGCAAATGCAGAACCAAA 1500 ||||||||||| ||||| || || ||||| || || ||||||||||| |||||||| ||| Sbjct 765 TCCTGTGCAGCAATGGACGATTTTCAACTAATTCCCATGATAAGCAAGTGCAGAACTAAA 706 Query 1501 GAAGGAAGACGGAAAACTAACCTGTATGGATTCCTTATAAAAGGAAGATCCCATTTGAGA 1560 || ||||| || ||||| || | ||||||||| | ||||| |||||||| |||||||| Sbjct 705 GAGGGAAGGCGAAAAACCAATTTATATGGATTCATCATAAAGGGAAGATCTCATTTGAGG 646 Query 1561 AATGACACCGATGTGGTAAACTTTGTGAGTATGGAATTCTCTCTTACTGATCCGAGGCTG 1620 |||||||| || |||||||| |||||||| ||||| || ||||| || || ||||| || Sbjct 645 AATGACACAGACGTGGTAAATTTTGTGAGCATGGAGTTTTCTCTCACAGACCCGAGACTT 586 Query 1621 GAGCCACACAGATGGGAAAAGTACTGCGTTCTTCGGATAGGAGACATGCTCTTACGGACT 1680 || ||||| | |||||| || ||||| || ||| ||||||||| ||| | || | | | Sbjct 585 GAACCACATAAATGGGAGAAATACTGTGTCCTTGAGATAGGAGATATGTTACTAAGAAGT 526 Query 1681 GAAATAGGCCAAGTGTCAAGGCCCATGTTTCTTTATGTGAGAACCAATGGAACCTCCAAG 1740 | ||||||||| | |||||||| ||||| | |||||||| || || ||||| || ||| Sbjct 525 GCCATAGGCCAAATTTCAAGGCCGATGTTCTTGTATGTGAGGACAAACGGAACATCAAAG 466 Query 1741 ATCAAGATGAAATGGGGCATGGAAATGAGGCGATGCCCTTTTCAATCCCTTCAACAGATT 1800 |||| ||||||||||| ||||| ||||| || |||| |||| || || || ||||| Sbjct 465 GTCAAAATGAAATGGGGAATGGAGATGAGACGTTGCCTCCTTCAGTCACTCCAGCAGATC 406 Query 1801 GAGAGCATGATTGAGGCCGAGTCTTCTGTCAAAGAAAAAGACATGACTAAAGAATTCTTT 1860 |||||||||||||| |||||||| || || ||||| ||||||||||| ||||| || ||| Sbjct 405 GAGAGCATGATTGAAGCCGAGTCCTCAGTTAAAGAGAAAGACATGACCAAAGAGTTTTTT 346 Query 1861 GAAAACAAATCAGAAACATGGCCAATTGGAGAATCACCCAAGGGAGTGGAGGAAGGCTCC 1920 || || ||||||||| ||||||| ||||| || || |||||||||||||| ||||| ||| Sbjct 345 GAGAATAAATCAGAAGCATGGCCCATTGGGGAGTCCCCCAAGGGAGTGGAAGAAGGTTCC 286 Query 1921 ATCGGGAAGGTGTGCAGAACCTTACTGGCTAAATCTGTTTTCAACAGTCTATATGCATCT 1980 || ||||| || || || || || ||||||| || || ||||| || || |||||||| Sbjct 285 ATTGGGAAAGTCTGTAGGACTCTATTGGCTAAGTCAGTATTCAATAGCCTGTATGCATCA 226 Query 1981 CCACAACTCGAGGGGTTTTCAGCTGAATCAAGAAAATTGCTTCTCATTGTTCAGGCACTT 2040 |||||| | || || |||||||| || ||||||||| |||| || |||||||||| ||| Sbjct 225 CCACAATTGGAAGGATTTTCAGCGGAGTCAAGAAAACTGCTCCTTGTTGTTCAGGCTCTT 166 Query 2041 AGGGACAACCTGGNNNNNNNNNNNNTCGATCTTGGGGGGCTATATGAAGCAATTGAGGAG 2100 ||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 165 AGGGACAACCTCGAACCTGGGACCTTTGATCTTGGGGGGCTATATGAAGCAATTGAGGAG 106 Query 2101 TGCCTGATTAATGATCCCTGGGTTTTGCTTAATGCATCTTGGTTCAACTCCTTCCTCACA 2160 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct 105 TGCCTGATTAATGATCCCTGGGTTTTGCTCAATGCGTCTTGGTTCAACTCCTTCCTGACA 46 Query 2161 CATGCACTAAGATAGTTGTGGCAATGCTACTATTTGCTATCCATA 2205 |||||| ||| |||||| ||||| |||||||||||| ||||| || Sbjct 45 CATGCATTAAAATAGTTATGGCAGTGCTACTATTTGTTATCCGTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7019442699270