Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007360.1 Length=1565 Score E Sequences producing significant alignments: (Bits) Value seq209859 1258 0.0 >seq209859 Length=1262 Score = 1258 bits (1394), Expect = 0.0 Identities = 1036/1262 (82%), Gaps = 0/1262 (0%) Strand=Plus/Plus Query 200 ATGAAGGAAGGCTGATTCAGAACAGCATAACAATAGAGAGAATGGTTCTCTCTGCATTTG 259 |||| ||| | |||||||| || ||||||||||||||||||||||| |||||||| |||| Sbjct 1 ATGAGGGACGACTGATTCAAAATAGCATAACAATAGAGAGAATGGTGCTCTCTGCTTTTG 60 Query 260 ATGAAAGGAGGAACAAATACCTGGAAGAACATCCCAGTGCGGGGAAGGACCCAAAGAAAA 319 | || || ||||| |||||||| ||||| ||||||||||| ||||| || || ||||||| Sbjct 61 ACGAGAGAAGGAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAAGATCCTAAGAAAA 120 Query 320 CTGGAGGTCCAATCTACCGAAGAAGAGACGGAAAATGGGTGAGAGAGCTGATTCTGTATG 379 ||||||| || || || ||||| ||||||||||||| |||| || || || || |||| Sbjct 121 CTGGAGGACCCATATATAAAAGAATAGACGGAAAATGGATGAGGGAACTCATCCTTTATG 180 Query 380 ACAAAGAGGAGATCAGGAGAATTTGGCGTCAAGCGAACAATGGAGAAGATGCAACTGCTG 439 ||||||| || || |||||| ||||||| ||||| |||||||| ||||||||||| || | Sbjct 181 ACAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCCAACAATGGTGAAGATGCAACAGCCG 240 Query 440 GTCTCACTCACATGATGATCTGGCATTCCAATCTAAATGATGCCACATACCAGAGAACAA 499 | || || || || ||||| ||||| |||||||| ||||||||||| || |||||||||| Sbjct 241 GCCTTACCCATATTATGATTTGGCACTCCAATCTGAATGATGCCACCTATCAGAGAACAA 300 Query 500 GAGCTCTCGTGCGTACTGGGATGGACCCTAGAATGTGCTCTCTGATGCAAGGATCAACTC 559 ||||||| || || ||||||||||| || ||||||||||| || |||||||| ||||| | Sbjct 301 GAGCTCTTGTTCGCACTGGGATGGATCCCAGAATGTGCTCCCTAATGCAAGGTTCAACAC 360 Query 560 TCCCGAGGAGATCTGGAGCTGCTGGTGCGGCAGTAAAGGGAGTCGGAACGATGGTGATGG 619 | || || || |||||||| || ||||| |||||||| ||||| ||||| || | ||||| Sbjct 361 TTCCCAGAAGGTCTGGAGCCGCAGGTGCTGCAGTAAAAGGAGTTGGAACAATAGCGATGG 420 Query 620 AACTAATTCGGATGATAAAGCGAGGGATTAACGATCGGAATTTCTGGAGAGGTGAAAATG 679 | |||| | ||||| || || ||||| || || || || |||||||| |||||||||| Sbjct 421 AGTTAATCAGAATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAAAATG 480 Query 680 GGCGAAGAACAAGAATTGCATATGAGAGAATGTGCAACATCCTCAAAGGGAAATTCCAAA 739 | ||||| ||||| ||||||||||| |||||||||||||| |||||||||||||| || | Sbjct 481 GACGAAGGACAAGGATTGCATATGAAAGAATGTGCAACATTCTCAAAGGGAAATTTCAGA 540 Query 740 CAGCAGCACAAAGAGCAATGATGGATCAGGTACGGGAAAGCAGAAATCCTGGGAATGCTG 799 |||| ||||| || |||||||||||||| || | ||||| | || || || || |||| Sbjct 541 CAGCTGCACAGAGGGCAATGATGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAACGCTG 600 Query 800 AGATTGAAGATCTCATATTTCTGGCACGGTCTGCACTCATCCTGAGAGGATCAGTGGCCC 859 | ||||||||||| || || ||||||||||| |||||||| | ||||| ||||| || | Sbjct 601 AAATTGAAGATCTTATTTTCCTGGCACGGTCAGCACTCATTTTAAGAGGGTCAGTTGCAC 660 Query 860 ACAAGTCCTGCTTGCCTGCTTGTGTGTACGGGCTTGCCGTGGCCAGTGGATATGACTTTG 919 | ||||| ||| |||||||||||||||| |||||||| || || ||||| ||||||||| Sbjct 661 ATAAGTCTTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCGAGTGGGCATGACTTTG 720 Query 920 AGAGAGAAGGGTACTCTCTGGTCGGGATTGATCCTTTCCGTCTGCTGCAAAACAGCCAGG 979 | |||||||| || |||||||||||||| || || ||| || || |||||||| || | Sbjct 721 AAAGAGAAGGATATTCTCTGGTCGGGATAGACCCCTTCAAACTACTTCAAAACAGTCAAG 780 Query 980 TCTTTAGTCTAATTAGACCAAATGAGAATCCAGCACATAAAAGTCAATTGGTGTGGATGG 1039 | || || ||||| ||||||||||| || ||||| || || |||||| |||||||||||| Sbjct 781 TATTCAGCCTAATCAGACCAAATGAAAACCCAGCTCACAAGAGTCAACTGGTGTGGATGG 840 Query 1040 CATGCCATTCTGCAGCATTTGAAGATCTGAGAGTCTCAAGCTTCATCAGAGGGACAAGAG 1099 | ||||| ||||| |||||||| ||| | ||||| ||| ||||||| ||||||| || || Sbjct 841 CTTGCCACTCTGCCGCATTTGAGGATTTAAGAGTATCAGGCTTCATAAGAGGGAAAAAAG 900 Query 1100 TGGCCCCAAGGGGACAACTATCTACTAGAGGAGTTCAAATTGCTTCAAATGAGAACATGG 1159 ||| ||||| ||| || || || ||||| ||||| ||||||||||||||||| ||| Sbjct 901 TGGTTCCAAGAGGAAGGCTTTCCACAAGAGGGGTTCAGATTGCTTCAAATGAGAATGTGG 960 Query 1160 AAACAATGGACTCCAGCACTCTTGAACTGAGAAGCAGATATTGGGCTATAAGGACCAGGA 1219 || | |||||||| || || || ||||| || ||||| || ||||| ||||||||||| | Sbjct 961 AAGCTATGGACTCTAGTACCCTGGAACTAAGGAGCAGGTACTGGGCCATAAGGACCAGAA 1020 Query 1220 GTGGAGGAAACACCAACCAGCAGAGAGCATCTGCAGGACAAATCAGTGTGCAGCCTACTT 1279 | || ||||| ||||| || |||| ||||| ||||| || ||||||||||| ||||| | Sbjct 1021 GCGGGGGAAATACCAATCAACAGAAGGCATCCGCAGGCCAGATCAGTGTGCAACCTACAT 1080 Query 1280 TCTCGGTACAGAGAAATCTTCCCTTCGAAAGAGCGACCATTATGGCGGCATTCACAGGGA 1339 |||| ||||| || ||||| || || || ||||||||| ||||||| || |||| ||| Sbjct 1081 TCTCAGTACAAAGGAATCTCCCTTTTGAGAGAGCGACCGTTATGGCAGCTTTCATTGGGG 1140 Query 1340 ATACAGAGGGCAGAACATCTGACATGAGGACTGAAATCATAAGGATGATGGAAAGCTCCA 1399 | | ||||| | ||||| || ||| | |||||||||||||||||||||||||| | | Sbjct 1141 ACAATGAGGGACGGACATCAGATATGCGAACTGAAATCATAAGGATGATGGAAAGTGCAA 1200 Query 1400 GACCAGAAGATGTGTCTTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAA 1459 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1201 AGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAA 1260 Query 1460 CG 1461 || Sbjct 1261 CG 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4887115403630