Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007362.1 Length=1760 Score E Sequences producing significant alignments: (Bits) Value seq197579 269 3e-69 >seq197579 Length=1067 Score = 269 bits (298), Expect = 3e-69 Identities = 393/561 (70%), Gaps = 14/561 (2%) Strand=Plus/Plus Query 889 TGCAACACCAAGTGTCAAACTCCAATGGGGGCGATAAACTCTAGTATGCCATTCCACAAC 948 || ||||| ||||||||||| || | ||| || |||||| | || | ||||| || || Sbjct 518 TGTAACACGAAGTGTCAAACACCCAAGGGTGCCATAAACACCAGCCTCCCATTTCAGAAT 577 Query 949 ATACACCCCCTCACCATCGGGGAATGCCCCAAATATGTGAAATCAAACAGATTAGTCCTT 1008 ||||| || |||| || || ||||| || |||||||| ||| | | ||| | Sbjct 578 ATACATCCAGTCACAATTGGAGAATGTCCAAAATATGTCAAAAGCACAAAATTGAGAATG 637 Query 1009 GCGACTGGACTCAGAAATACCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTATTT 1068 || || ||||| || |||| ||| | || ||| Sbjct 638 GCTACAGGACTAAGGAATATCCC------------GTCTATTCAATCTAGAGGTCTGTTT 685 Query 1069 GGAGCTATAGCAGGTTTTATAGAGGGAGGATGGCAGGGAATGGTAGATGGTTGGTATGGG 1128 ||||| || || |||||||| ||||| |||||| |||||| ||||||| |||||||| Sbjct 686 GGAGCCATTGCTGGTTTTATTGAGGGGGGATGGACAGGAATGATAGATGGATGGTATGGT 745 Query 1129 TACCACCATAGCAATGAGCAGGGGAGTGGATACGCTGCAGAC-AAAGAATCCACTCAAAA 1187 || |||||| ||||| ||||| ||||| || || ||| |||| | | || ||||| Sbjct 746 TATCACCATCAGAATGAACAGGGATCAGGATATGCAGCGGACCAAAGGAGC-ACACAAAA 804 Query 1188 GGCAATAGATGGAGTCACCAATAAGGTCAACTCGATCATTGACAAAATGAACACTCAGTT 1247 || || || || |||| || || || || || | ||||| || |||||||| || || Sbjct 805 TGCCATTGACGGGATCACTAACAAAGTAAATTCTGTTATTGAAAAGATGAACACGCAATT 864 Query 1248 TGAGGCCGTTGGAAGGGAATTTAATAACTTGGAAAGGAGGATAGAGAATTTAAACAAGCA 1307 ||| || || | ||||| || ||||||||| || ||||||||||||||||| | Sbjct 865 CACGGCAGTGGGTAAAGAATTCAACCACTTGGAAAAAAGAATAGAGAATTTAAACAAAAA 924 Query 1308 GATGGAAGACGGATTCCTAGATGTCTGGACTTATAATGCTGAACTTCTGGTTCTCATGGA 1367 | | || || || || || ||| | ||||| || ||||| ||||| ||||||| |||| Sbjct 925 GGTTGATGATGGTTTTCTGGATATTTGGACATACAATGCAGAACTGTTGGTTCTATTGGA 984 Query 1368 AAATGAGAGAACTCTAGACTTTCATGACTCAAATGTCAAGAACCTTTATGACAAGGTCCG 1427 |||||| |||||||| || || || ||||| ||||| |||||||| ||||| || || | Sbjct 985 AAATGAAAGAACTCTGGATTTCCACGACTCGAATGTAAAGAACCTGTATGAGAAAGTAAG 1044 Query 1428 ACTACAGCTTAGGGATAATGC 1448 | ||||| ||| | ||||| Sbjct 1045 AAGCCAGCTAAGGAACAATGC 1065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5509576215980