Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007363.1 Length=1027 Score E Sequences producing significant alignments: (Bits) Value seq197496 1319 0.0 >seq197496 Length=1027 Score = 1319 bits (1462), Expect = 0.0 Identities = 908/1026 (88%), Gaps = 0/1026 (0%) Strand=Plus/Minus Query 1 AGCAAAAGCAGGTAGATATTGAAAAATGAGTCTTCTAACCGAGGTCGAAACGTACGTTCT 60 ||||||||||||||||| || ||| ||||| ||||||||||||||||||||||| ||||| Sbjct 1026 AGCAAAAGCAGGTAGATGTTTAAAGATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCT 967 Query 61 CTCTATCGTCCCGTCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTTGAGGATGTCTT 120 ||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct 966 CTCTATCGTTCCGTCAGGCCCCCTCAAAGCCGAGATAGCGCAGAGACTTGAAGATGTTTT 907 Query 121 TGCAGGAAAGAACACCGATCTCGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATCCT 180 |||||| || ||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 906 TGCAGGGAAAAACACCGATCTTGAGGCACTCATGGAATGGCTAAAGACAAGACCAATCCT 847 Query 181 GTCACCTCTGACTAAAGGGATTTTAGGATTTGTGTTCACGCTCACCGTGCCCAGTGAGCG 240 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 846 GTCACCTCTGACTAAGGGGATTTTAGGATTTGTATTCACGCTCACCGTGCCCAGTGAGCG 787 Query 241 AGGACTGCAGCGTAGACGCTTTGTCCAGAATGCCTTAAATGGAAATGGAGATCCAAACAA 300 |||||||||||||||||||||||||||||||||| | ||||| || || || || ||||| Sbjct 786 AGGACTGCAGCGTAGACGCTTTGTCCAGAATGCCCTCAATGGGAACGGTGACCCGAACAA 727 Query 301 TATGGATAGGGCAGTTAAGCTATACAAGAAGCTGAAAAGAGAAATAACATTCCATGGGGC 360 ||||| | || || || || |||| || || ||||| |||||||||||||| ||||| Sbjct 726 CATGGACAAAGCGGTCAAACTGTACAGAAAACTCAAAAGGGAAATAACATTCCACGGGGC 667 Query 361 TAAGGAGGTCGCACTCAGCTACTCAACCGGTGCACTTGCCAGTTGTATGGGTCTCATATA 420 || || || || ||||| || || | ||||||||||||||||| ||||| |||||||| Sbjct 666 CAAAGAAGTAGCGCTCAGTTATTCTGCTGGTGCACTTGCCAGTTGCATGGGCCTCATATA 607 Query 421 CAACAGGATGGGAACGGTGACCACAGAAGTGGCTTTTGGCCTAGTGTGTGCCACTTGTGA 480 |||||| ||||| || || ||||| || ||||| ||||| ||||| || || || ||||| Sbjct 606 CAACAGAATGGGGACTGTCACCACTGAGGTGGCATTTGGTCTAGTATGCGCAACCTGTGA 547 Query 481 GCAGATTGCAGATTCACAGCATCGGTCTCACAGACAGATGGCAACTACCACCAACCCACT 540 |||||||| ||||| |||||||| ||||| ||||| |||| || || ||||| ||||| Sbjct 546 ACAGATTGCTGATTCCCAGCATCGATCTCATAGACAAATGGTGACAACAACCAATCCACT 487 Query 541 AATCAGGCATGAGAACAGAATGGTGCTGGCCAGCACTACAGCTAAGGCTATGGAGCAGAT 600 |||||||||||||||||||||||| | |||||||| || ||||| || ||||| || || Sbjct 486 AATCAGGCATGAGAACAGAATGGTATTAGCCAGCACAACGGCTAAAGCCATGGAACAAAT 427 Query 601 GGCTGGATCGAGTGAGCAGGCAGCGGAAGCCATGGAGGTTGCTAGTCAGGCTAGGCAGAT 660 ||||||||| ||||| || ||||| || |||||||||||||| || ||||||||||| || Sbjct 426 GGCTGGATCAAGTGAACAAGCAGCAGAGGCCATGGAGGTTGCCAGCCAGGCTAGGCAAAT 367 Query 661 GGTGCAGGCAATGAGGACAATTGGGACTCATCCTAGCTCCAGTGCCGGTCTGAAAGATAA 720 ||| ||||||||||| |||||||||||||| ||||| |||||||| ||||| |||||| | Sbjct 366 GGTACAGGCAATGAGAACAATTGGGACTCACCCTAGTTCCAGTGCTGGTCTAAAAGATGA 307 Query 721 TCTTCTTGAAAATTTGCAGGCCTACCAAAAACGAATGGGAGTGCAAATGCAGCGATTCAA 780 ||||||||||||||| |||||||| || || |||||||| ||||| ||||| |||||||| Sbjct 306 TCTTCTTGAAAATTTACAGGCCTATCAGAAGCGAATGGGGGTGCAGATGCAACGATTCAA 247 Query 781 GTGATCCTCTTGTTGTTGCCGCAAGTATCATTGGGATACTGCACTTGATATTGTGGATTC 840 |||||||||| |||| ||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 246 GTGATCCTCTCGTTGCTGCCGCAAGCATCATTGGGATTTTGCACCTGATATTGTGGATTC 187 Query 841 TTGATCGTCTTTTCTTCAAATGCATTTATCGTCGCCTTAAATACGGTTTGAAAAGAGGGC 900 ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 186 TTGATCGTCTTTTTTTCAAATGCATTTACCGTCGCTTTAAATACGGTTTGAAAAGAGGGC 127 Query 901 CTTCTACGGAAGGGGTACCTGAGTCTATGAGGGAAGAGTATCGGCAGGAACAGCAGAGTG 960 ||||||||||||| || || ||||||||||||||||| ||||||||| |||||||||||| Sbjct 126 CTTCTACGGAAGGAGTGCCGGAGTCTATGAGGGAAGAATATCGGCAGAAACAGCAGAGTG 67 Query 961 CTGTGGATGTTGACGATGGTCATTTTGTCAACATAGAGCTGGAGTAAAAAACTACCTTGT 1020 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 66 CTGTGGATGTTGACGATGGTCATTTTGTCAACATAGTGCTAGAGTAAAAAACTACCTTGT 7 Query 1021 TTCTAC 1026 |||||| Sbjct 6 TTCTAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3173184851690