Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007367.1 Length=1027 Score E Sequences producing significant alignments: (Bits) Value seq197496 1373 0.0 >seq197496 Length=1027 Score = 1373 bits (1522), Expect = 0.0 Identities = 920/1026 (90%), Gaps = 0/1026 (0%) Strand=Plus/Minus Query 1 AGCAAAAGCAGGTAGATATTGAAAGATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCT 60 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 1026 AGCAAAAGCAGGTAGATGTTTAAAGATGAGCCTTCTAACCGAGGTCGAAACGTATGTTCT 967 Query 61 CTCTATCGTTCCATCAGGCCCCCTCAAAGCCGAGATCGCGCAGAGACTTGAAGATGTCTT 120 |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 966 CTCTATCGTTCCGTCAGGCCCCCTCAAAGCCGAGATAGCGCAGAGACTTGAAGATGTTTT 907 Query 121 TGCTGGGAAAAACACAGATCTTGAGGCTCTCATGGAATGGCTAAAGACAAGACCAATTCT 180 ||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || Sbjct 906 TGCAGGGAAAAACACCGATCTTGAGGCACTCATGGAATGGCTAAAGACAAGACCAATCCT 847 Query 181 GTCACCTCTGACTAAGGGGATTTTGGGGTTTGTGTTCACGCTCACCGTGCCCAGTGAGCG 240 |||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| Sbjct 846 GTCACCTCTGACTAAGGGGATTTTAGGATTTGTATTCACGCTCACCGTGCCCAGTGAGCG 787 Query 241 AGGACTGCAGCGTAGACGCTTTGTCCAAAATGCCCTCAATGGGAATGGAGATCCAAATAA 300 ||||||||||||||||||||||||||| ||||||||||||||||| || || || || || Sbjct 786 AGGACTGCAGCGTAGACGCTTTGTCCAGAATGCCCTCAATGGGAACGGTGACCCGAACAA 727 Query 301 CATGGACAAAGCAGTTAAACTGTATAGGAAACTTAAGAGGGAGATAACGTTCCATGGGGC 360 |||||||||||| || |||||||| || ||||| || ||||| ||||| ||||| ||||| Sbjct 726 CATGGACAAAGCGGTCAAACTGTACAGAAAACTCAAAAGGGAAATAACATTCCACGGGGC 667 Query 361 CAAAGAAATAGCTCTCAGTTATTCTGCTGGTGCACTTGCCAGTTGCATGGGCCTCATATA 420 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 666 CAAAGAAGTAGCGCTCAGTTATTCTGCTGGTGCACTTGCCAGTTGCATGGGCCTCATATA 607 Query 421 CAATAGGATGGGGGCTGTAACCACTGAAGTGGCATTTGGCCTGGTATGTGCAACATGTGA 480 ||| || |||||| |||| |||||||| ||||||||||| || ||||| ||||| ||||| Sbjct 606 CAACAGAATGGGGACTGTCACCACTGAGGTGGCATTTGGTCTAGTATGCGCAACCTGTGA 547 Query 481 ACAGATTGCTGACTCCCAGCACAGGTCTCATAGGCAAATGGTGGCAACAACCAATCCATT 540 |||||||||||| |||||||| | |||||||| ||||||||| |||||||||||||| | Sbjct 546 ACAGATTGCTGATTCCCAGCATCGATCTCATAGACAAATGGTGACAACAACCAATCCACT 487 Query 541 AATAAAACATGAGAACAGAATGGTTTTGGCCAGCACTACAGCTAAGGCTATGGAGCAAAT 600 ||| | ||||||||||||||||| || |||||||| || ||||| || ||||| ||||| Sbjct 486 AATCAGGCATGAGAACAGAATGGTATTAGCCAGCACAACGGCTAAAGCCATGGAACAAAT 427 Query 601 GGCTGGATCAAGTGAGCAGGCAGCGGAGGCCATGGAAATTGCTAGTCAGGCCAGGCAAAT 660 ||||||||||||||| || ||||| ||||||||||| |||| || ||||| |||||||| Sbjct 426 GGCTGGATCAAGTGAACAAGCAGCAGAGGCCATGGAGGTTGCCAGCCAGGCTAGGCAAAT 367 Query 661 GGTGCAGGCAATGAGAGCCGTTGGGACTCATCCTAGCTCCAGTACTGGTCTAAGAGATGA 720 ||| |||||||||||| | |||||||||| ||||| |||||| ||||||||| |||||| Sbjct 366 GGTACAGGCAATGAGAACAATTGGGACTCACCCTAGTTCCAGTGCTGGTCTAAAAGATGA 307 Query 721 TCTTCTTGAAAATTTGCAGACCTATCAGAAACGAATGGGGGTGCAGATGCAACGATTCAA 780 ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 306 TCTTCTTGAAAATTTACAGGCCTATCAGAAGCGAATGGGGGTGCAGATGCAACGATTCAA 247 Query 781 GTGACCCGCTTGTTGTTGCCGCGAGTATCATTGGGATCTTGCACTTGATATTGTGGATTC 840 |||| || || |||| |||||| || ||||||||||| |||||| ||||||||||||||| Sbjct 246 GTGATCCTCTCGTTGCTGCCGCAAGCATCATTGGGATTTTGCACCTGATATTGTGGATTC 187 Query 841 TTGATCGTCtttttttCAAATGCGTCTATCGACTCTTCAAACACGGCCTTAAAAGAGGCC 900 ||||||||||||||||||||||| | || || | ||| ||| |||| | |||||||| | Sbjct 186 TTGATCGTCTTTTTTTCAAATGCATTTACCGTCGCTTTAAATACGGTTTGAAAAGAGGGC 127 Query 901 CTTCTACGGAAGGAGTACCTGAGTCTATGAGGGAAGAATATCGAAAGGAACAGCAGAATG 960 |||||||||||||||| || ||||||||||||||||||||||| || ||||||||| || Sbjct 126 CTTCTACGGAAGGAGTGCCGGAGTCTATGAGGGAAGAATATCGGCAGAAACAGCAGAGTG 67 Query 961 CTGTGGATGCTGACGACAGTCATTTTGTCAGCATAGAGTTGGAGTAAAAAACTACCTTGT 1020 ||||||||| |||||| |||||||||||| ||||| | | ||||||||||||||||||| Sbjct 66 CTGTGGATGTTGACGATGGTCATTTTGTCAACATAGTGCTAGAGTAAAAAACTACCTTGT 7 Query 1021 TTCTAC 1026 |||||| Sbjct 6 TTCTAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3173184851690