Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Salmo_20salar_20[refseq_20GCF_5F000233375.1_202015-06-10] 232,155 sequences; 2,966,890,203 total letters Query= NC_007369.1 Length=1566 Score E Sequences producing significant alignments: (Bits) Value seq209859 1297 0.0 >seq209859 Length=1262 Score = 1297 bits (1438), Expect = 0.0 Identities = 1045/1262 (83%), Gaps = 0/1262 (0%) Strand=Plus/Plus Query 200 ATGAAGGGCGGTTGATCCAGAACAGCTTGACAATAGAGAAAATGGTGCTCTCTGCTTTTG 259 |||| || || |||| || || ||| | |||||||||| |||||||||||||||||||| Sbjct 1 ATGAGGGACGACTGATTCAAAATAGCATAACAATAGAGAGAATGGTGCTCTCTGCTTTTG 60 Query 260 ATGAAAGAAGGAATAAATACCTGGAAGAACACCCCAGCGCGGGGAAAGATCCCAAGAAAA 319 | || ||||||||||||||||| ||||| || ||||| || ||||||||||| ||||||| Sbjct 61 ACGAGAGAAGGAATAAATACCTAGAAGAGCATCCCAGTGCTGGGAAAGATCCTAAGAAAA 120 Query 320 CTGGGGGGCCCATATACAGGAGAGTAGATGGAAAATGGATGAGGGAACTCGTCCTTTATG 379 |||| || |||||||| | ||| |||| ||||||||||||||||||||| ||||||||| Sbjct 121 CTGGAGGACCCATATATAAAAGAATAGACGGAAAATGGATGAGGGAACTCATCCTTTATG 180 Query 380 ACAAAGAAGAGATAAGGCGAATCTGGCGCCAAGCCAACAATGGTGAGGATGCGACAGCTG 439 |||||||||| |||||| || | ||||||||||||||||||||||| ||||| ||||| | Sbjct 181 ACAAAGAAGAAATAAGGAGAGTTTGGCGCCAAGCCAACAATGGTGAAGATGCAACAGCCG 240 Query 440 GTCTAACTCACATAATGATCTGGCATTCCAATTTGAATGATGCAACATACCAGAGGACAA 499 | || || || || ||||| ||||| |||||| |||||||||| || || ||||| |||| Sbjct 241 GCCTTACCCATATTATGATTTGGCACTCCAATCTGAATGATGCCACCTATCAGAGAACAA 300 Query 500 GAGCTCTTGTTCGAACTGGAATGGATCCCAGAATGTGCTCTCTGATGCAGGGCTCGACTC 559 ||||||||||||| ||||| |||||||||||||||||||| || ||||| || || || | Sbjct 301 GAGCTCTTGTTCGCACTGGGATGGATCCCAGAATGTGCTCCCTAATGCAAGGTTCAACAC 360 Query 560 TCCCTAGAAGGTCCGGAGCTGCAGGTGCTGCAGTCAAAGGAATCGGGACAATGGTGATGG 619 | || |||||||| ||||| |||||||||||||| |||||| | || ||||| | ||||| Sbjct 361 TTCCCAGAAGGTCTGGAGCCGCAGGTGCTGCAGTAAAAGGAGTTGGAACAATAGCGATGG 420 Query 620 AACTGATCAGAATGGTCAAACGGGGGATCAACGATCGAAATTTCTGGAGAGGTGAGAATG 679 | | ||||||||| ||||||| |||||||| || ||||| |||||||| ||||| |||| Sbjct 421 AGTTAATCAGAATGATCAAACGTGGGATCAATGACCGAAACTTCTGGAGGGGTGAAAATG 480 Query 680 GGCGGAAAACAAGAAGTGCTTATGAGAGAATGTGCAACATTCTTAAAGGAAAATTTCAAA 739 | || | ||||| | ||| ||||| ||||||||||||||||| ||||| |||||||| | Sbjct 481 GACGAAGGACAAGGATTGCATATGAAAGAATGTGCAACATTCTCAAAGGGAAATTTCAGA 540 Query 740 CAGCTGCACAAAGAGCAATGGTGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAATGCTG 799 |||||||||| || |||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 541 CAGCTGCACAGAGGGCAATGATGGATCAAGTGAGAGAAAGTCGGAACCCAGGAAACGCTG 600 Query 800 AGATCGAAGATCTCATATTTTTGGCAAGATCTGCATTGATATTGAGAGGGTCAGTTGCTC 859 | || |||||||| || || ||||| | || ||| | || || |||||||||||||| | Sbjct 601 AAATTGAAGATCTTATTTTCCTGGCACGGTCAGCACTCATTTTAAGAGGGTCAGTTGCAC 660 Query 860 ACAAATCTTGCCTACCTGCCTGTGCGTATGGACCTGCAGTATCCAGTGGGTACGACTTCG 919 | || |||||||| ||||| |||| |||||| | ||||||| | |||||| | ||||| | Sbjct 661 ATAAGTCTTGCCTGCCTGCTTGTGTGTATGGGCTTGCAGTAGCGAGTGGGCATGACTTTG 720 Query 920 AAAAAGAGGGATATTCCTTGGTGGGAATAGACCCTTTCAAACTACTTCAAAATAGCCAAA 979 ||| ||| |||||||| |||| || |||||||| ||||||||||||||||| || ||| Sbjct 721 AAAGAGAAGGATATTCTCTGGTCGGGATAGACCCCTTCAAACTACTTCAAAACAGTCAAG 780 Query 980 TATACAGCCTAATCAGACCTAACGAGAATCCAGCACACAAGAGTCAGCTGGTGTGGATGG 1039 ||| ||||||||||||||| || || || ||||| ||||||||||| ||||||||||||| Sbjct 781 TATTCAGCCTAATCAGACCAAATGAAAACCCAGCTCACAAGAGTCAACTGGTGTGGATGG 840 Query 1040 CATGCCATTCTGCTGCATTTGAAGATTTAAGATTGTTAAGCTTCATCAGAGGGACAAAAG 1099 | ||||| ||||| |||||||| ||||||||| | | | ||||||| ||||||| ||||| Sbjct 841 CTTGCCACTCTGCCGCATTTGAGGATTTAAGAGTATCAGGCTTCATAAGAGGGAAAAAAG 900 Query 1100 TATCTCCGCGGGGGAAACTGTCAACTAGAGGAGTACAAATTGCTTCAAATGAGAACATGG 1159 | ||| | || | || || || ||||| || || ||||||||||||||||| ||| Sbjct 901 TGGTTCCAAGAGGAAGGCTTTCCACAAGAGGGGTTCAGATTGCTTCAAATGAGAATGTGG 960 Query 1160 ATAATATGGGATCGAGCACTCTTGAACTGAGAAGCGGGTACTGGGCCATAAGGACCAGGA 1219 | ||||| || || || || ||||| || ||| |||||||||||||||||||||| | Sbjct 961 AAGCTATGGACTCTAGTACCCTGGAACTAAGGAGCAGGTACTGGGCCATAAGGACCAGAA 1020 Query 1220 GTGGAGGAAACACTAATCAACAGAGGGCCTCCGCAGGCCAAACCAGTGTGCAACCTACGT 1279 | || ||||| || |||||||||| ||| ||||||||||| | ||||||||||||||| | Sbjct 1021 GCGGGGGAAATACCAATCAACAGAAGGCATCCGCAGGCCAGATCAGTGTGCAACCTACAT 1080 Query 1280 TTTCTGTACAAAGAAACCTCCCATTTGAAAAGTCAACCATCATGGCAGCATTCACTGGAA 1339 | || |||||||| || ||||| ||||| | | ||| | |||||||| |||| ||| Sbjct 1081 TCTCAGTACAAAGGAATCTCCCTTTTGAGAGAGCGACCGTTATGGCAGCTTTCATTGGGG 1140 Query 1340 ATACGGAGGGAAGGACTTCAGACATGAGGGCAGAAATCATAAGAATGATGGAAGGTGCAA 1399 | | |||||| |||| ||||| ||| | | ||||||||||| ||||||||| |||||| Sbjct 1141 ACAATGAGGGACGGACATCAGATATGCGAACTGAAATCATAAGGATGATGGAAAGTGCAA 1200 Query 1400 AACCAGAAGAAGTGTCATTCCGGGGGAGGGGAGTTTTCGAGCTCTCAGACGAGAAGGCAA 1459 | |||||||| |||| |||| |||| ||||||| ||||||||||| ||||| ||||||| Sbjct 1201 AGCCAGAAGATTTGTCCTTCCAGGGGCGGGGAGTCTTCGAGCTCTCGGACGAAAAGGCAA 1260 Query 1460 CG 1461 || Sbjct 1261 CG 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4890307510360